Protein
MCA_05258_1
Length
468 amino acids
Browser: contigD:784789-786196-
RNA-seq: read pairs 684, FPKM 18.0, percentile rank 38.5% (100% = highest expression)
Protein function
| KEGG: | K13093 | HTATSF1 | HIV Tat-specific factor 1 |
|---|---|---|---|
| EGGNOG: | 0PJNH | FG01010.1 | Nuclear mRNA splicing factor-associated protein |
| SGD closest match: | S000005230 | CUS2 | Cold sensitive U2 snRNA suppressor 2 |
| CGD closest match: | CAL0000190879 | orf19.5767 | U2 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X890_GEOCN | 41.14% | 440 | 2e-80 | Similar to Saccharomyces cerevisiae YNL286W CUS2 Protein that binds to U2 snRNA and Prp11p, may be involved in U2 snRNA folding OS=Geotrichum candidum GN=BN980_GECA05s00626g PE=4 SV=1 |
| UniRef50_A0A0J9X890 | 41.14% | 440 | 3e-77 | Similar to Saccharomyces cerevisiae YNL286W CUS2 Protein that binds to U2 snRNA and Prp11p, may be involved in U2 snRNA folding n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X890_GEOCN |
| A0A060T431_BLAAD | 37.33% | 300 | 2e-47 | ARAD1C45452p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C45452g PE=4 SV=1 |
| A0A167EET4_9ASCO | 42.44% | 205 | 9e-45 | Cus2p OS=Sugiyamaella lignohabitans GN=CUS2 PE=4 SV=1 |
| Q6C3D3_YARLI | 38.31% | 308 | 6e-42 | YALI0F00660p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F00660g PE=4 SV=1 |
| A0A1E3PE39_9ASCO | 37.14% | 210 | 3e-33 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48008 PE=4 SV=1 |
| A0A1D8PQA3_CANAL | 32.41% | 216 | 5e-19 | U2 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5767 PE=4 SV=1 |
| CUS2_YEAST | 48.39% | 93 | 1e-12 | Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1 |
| A0A1E4TJA8_9ASCO | 33.00% | 100 | 3e-09 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_16662 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1459
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
50
100
150
200
250
300
350
400
468
Detailed signature matches
-
-
cd12281 (RRM1_TatSF...)
-
no IPR
Unintegrated signatures
-
-
-
cd12285 (RRM3_RBM39...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_05258_1 MSSKKVSEVEDSTLIEQSIDAQGTSQEEENSAQKKLNFSDWKNDPRVAFDQVANKWIFEDPENGDEFEYDEIRKIWIPVI DEEEIENQQNAYKQASEEHPVTKQLIPESNQHLESDTKLDELEALDSKYTKGQKRKSTLSDEDTNTKKSSNSKNSKQKTH VPPPNRGIYITKLPLDTTVEELDQVFSKYGMISQDISDQSKRIKIYKDHETGKPKGDALIIYFKPESVQLAVEMMDEAEL RVGDKTSVIHVEPAQFDPTAAKNKQQSYKKNASEASSKDGEPVEETAEEERQRLKKKAKIKKQYEKMNEKLADWDEDEDD DRFDELNPALRLERRQDSIPKRWDKFVILKNVFTLEELEEDPEALGEIEQDMWAGAEEIGPVTKVVLFDGEPEGVVSIKF KNKQDVIKCILKMNGRFYTGRKLEADFYDGTKRYKTKEDLKKQQNVDGDDDEEQKRIEEFGNWLEREE
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.