MCA_05240_1

Browser: contigD:727814-729284+

RNA-seq: read pairs 3662, FPKM 92.3, percentile rank 77.3% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0490

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   489 - 489

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   21 - 467

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 20

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   15 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   3 - 14

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 2

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 20

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TRANSMEMBRANE (Tran...)
   468 - 488

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
9. mobidb-lite (disord...)
   112 - 278

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   386 - 414

   MobiDB Lite
   mobidb-lite (disorder_prediction)

Protein sequence

>MCA_05240_1
MKFSISAVLIAAAFSGFAKAAPNPEAASQNSAAVLQCLLNSCVPAFRTVDACGDDNACICGSGTGQSPLDEAEECAQCIL
DAGGAGTNTSAQRLLERVESIRASCNAATSTTTTTTTTTSTTTDTSTTDDSSTDTSTTDASSTDASTTDASTTDTSTTDT
SSTDTSSTDASTTDASTTDTSSTDTSTDSSTTEVPTDSSDSASIAPTNAPGSSADSSDSASIAPTNAPNSSSNTTTTSSS
AIDASSSDSGSIAPTLLPTTSAPGNGTVTTSSTSSGYTTTVTECKQDGSCETKTVTVCPTCTPAPTSAPTTSAPVTTVTV
CKEDGSCHVTTVTVTEDCYTTTITKCHDDGKCTTVTETITPGKPTDGGKPTDSGKPSVPVVTETVCTEESCKEEGKPTKG
GEGKPSSSSSSAPVVTETVCTEEKCKEGKPTAPATTATVTCTEEKCQTKPVAPVSPSDTPLLPQVNKAVSLGASSALAIA
LPIAFAMLI

GO term prediction