Protein
MCA_05192_1
Length
716 amino acids
Browser: contigD:588165-590379-
RNA-seq: read pairs 1421, FPKM 24.5, percentile rank 47.2% (100% = highest expression)
Protein function
| EGGNOG: | 0PIQ0 | FG05873.1 | conserved hypothetical protein |
|---|---|---|---|
| SGD closest match: | S000003245 | SNU71 | U1 small nuclear ribonucleoprotein component SNU71 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01230_1 | 43.28% | 714 | 2e-170 | MIA_01230_1 |
| A0A0J9X464_GEOCN | 35.91% | 660 | 7e-98 | Similar to Saccharomyces cerevisiae YGR013W SNU71 Component of U1 snRNP required for mRNA splicing via spliceosome OS=Geotrichum candidum GN=BN980_GECA02s02903g PE=4 SV=1 |
| UniRef50_A0A0J9X464 | 35.91% | 660 | 1e-94 | Similar to Saccharomyces cerevisiae YGR013W SNU71 Component of U1 snRNP required for mRNA splicing via spliceosome n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X464_GEOCN |
| A0A060T3B4_BLAAD | 29.51% | 654 | 8e-74 | ARAD1C31460p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C31460g PE=4 SV=1 |
| A0A1E3PEF4_9ASCO | 28.02% | 439 | 3e-34 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_80513 PE=4 SV=1 |
| A0A167EWF6_9ASCO | 27.47% | 415 | 3e-31 | Uncharacterized protein OS=Sugiyamaella lignohabitans GN=AWJ20_2138 PE=4 SV=1 |
| Q6CAR7_YARLI | 23.29% | 395 | 2e-10 | YALI0D00539p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D00539g PE=4 SV=1 |
| A0A1E4TGZ4_9ASCO | 25.32% | 233 | 1e-06 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_44652 PE=4 SV=1 |
| SNU71_YEAST | 33.33% | 54 | 7e-06 | U1 small nuclear ribonucleoprotein component SNU71 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU71 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8011
Predicted cleavage: 46
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
716
Detailed signature matches
-
-
SSF54928 (RNA-bindi...)
-
no IPR
Unintegrated signatures
-
-
-
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cd00590 (RRM_SF)
-
mobidb-lite (disord...)
Protein sequence
>MCA_05192_1 MNRGVLGAPPRNYSQVQLTSQPQPNISVPNVKHTYYNSISPFGRVPANPLATKFQDVKNLTAFRPLKPMIGLPSNRASNS SKTSKPNANVLNTMNSTMNLAPLITVDTFYPMTTEQQLRTVFVSNIPELMDDATVNSIFRTIPGFDRLSRVLNGRGQALS YGFIRYSHVDSIKGLMNTLSKIDFKSLTNGTFETLFSLYPEENTLRYIEDRVKENDEDYFNSLCVDGQGVPSATAIENII KEWYIQISATYGTNITIKSQSSAPADEGNNKESASRNINDIKNLEDIEVDESEYADLEIDDRETVLREIREFRLLSLEYE RVKQDQNAEEQKERDRHFEKLASKLLADDQGNKTSKDSYYSRYNDLDDSRLFTERDFGDLSASEDDDDTYDPETNNQTDE QIEEMKQSRIRLKQERAFEEEQRRLMARERMRTSALERERVRDAEYDARLERNKKQALKQFAEFVDDGEFERKNMEYYYN HATWVKNRMAFRRRELAHDMRDAEEERIELEQKKNADNFMSSLATELNKENATSESQPKFKISLGAAAKKKQQQQHPETA EHKEEPKEKEAAEENTGLSSQISVNYGSIAELDNLKDLYKEKQVEQVLYEKLCSLIDSIPKSSSNGLFDWNVHWDSITED IIETRIEPFVTALIIEYLGIQEDELIGFVIDYVREHKSPQKLVSDLEDALDEDTVPFIEKVWRLVVFESERNHKKL
GO term prediction
Biological Process
GO:0006397 mRNA processing
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.