Protein
MCA_05191_1
Length
834 amino acids
Gene name: SYF1
Description: Pre-mRNA-splicing factor SYF1
Browser: contigD:585476-587981+
RNA-seq: read pairs 705, FPKM 10.4, percentile rank 26.6% (100% = highest expression)
Protein function
| Annotation: | SYF1 | Pre-mRNA-splicing factor SYF1 | |
|---|---|---|---|
| KEGG: | K12867 | SYF1 | pre-mRNA-splicing factor SYF1 |
| EGGNOG: | 0PHN7 | SYF1 | pre-mRNA-splicing factor SYF1 |
| SGD closest match: | S000002824 | SYF1 | Pre-mRNA-splicing factor SYF1 |
| CGD closest match: | CAL0000190481 | orf19.2893 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01229_1 | 62.21% | 807 | 0.0 | MIA_01229_1 |
| A0A0J9X472_GEOCN | 57.38% | 833 | 0.0 | Similar to Saccharomyces cerevisiae YDR416W SYF1 Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNA OS=Geotrichum candidum GN=BN980_GECA02s02914g PE=4 SV=1 |
| UniRef50_Q5BH69 | 48.18% | 880 | 0.0 | Pre-mRNA-splicing factor syf1 n=326 Tax=Fungi TaxID=4751 RepID=SYF1_EMENI |
| A0A060T2U4_BLAAD | 50.12% | 830 | 0.0 | ARAD1C31438p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C31438g PE=4 SV=1 |
| A0A167EWH6_9ASCO | 49.71% | 849 | 0.0 | Syf1p OS=Sugiyamaella lignohabitans GN=SYF1 PE=4 SV=1 |
| A0A1E3PED8_9ASCO | 47.78% | 854 | 0.0 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53404 PE=4 SV=1 |
| SYF1_YARLI | 42.84% | 768 | 0.0 | Pre-mRNA-splicing factor SYF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYF1 PE=3 SV=1 |
| A0A1E4TKU4_9ASCO | 37.01% | 797 | 1e-168 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_30533 PE=4 SV=1 |
| A0A1D8PMK6_CANAL | 28.51% | 905 | 5e-91 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2893 PE=4 SV=1 |
| SYF1_YEAST | 27.21% | 599 | 7e-59 | Pre-mRNA-splicing factor SYF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYF1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0150
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
-
Repeat
1
100
200
300
400
500
600
700
834
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_05191_1 MFLILDSDIPYEQEILKASADDITPWLRYIQHKSDLSRPLSELVFVYERACRVFPRSYKLWKAYLDLRVKHVSSLNYATN TSEFHKVNQCFERALILLNKMPKIWTSYLSFLVKYQVDATFIRNKFNKALQSVSVYQHEQIWDLYLQFALYSTCDEACIE VFKRYLYIYPQRVEDLVNLLSERKHYNQLCKVLILLLEDSNNSSNSNTSNYISSNRNSTDYRFQAIYIENKSKYQLWSQL TDILVNHPKETSEWPTERIIRSGITRYPDQAGKLWVSLATYFINKQDFESARDVFEEGMTTAMTVRDFSLVFDSYSEMEE VNLSRMVEKSAQENGGNQELDAEIDRLMGAFELLMDRRLFLLSDVLLRQDPNNVMEWEKRIALWKGNNDQVIETYTKALA TINPAKANGKLSTLWINYAKFFETEINDIKTASTIFEKATKVPFKSVEELADVYIEWSDMQLRQGEFDIAVKVMETATKS PKFSKIDYFDTSLTPQERLHKSMKIWSYYVDLIESVSVDDDDEEDVKAEGIKKVKAVYERILELKIATPLTIVNYANFLW ENNRFEEAFKVYEKGVDLFSYPTAFEIWNIYLKRAIERKLGIERLRDLFEQALNGCPSNLVKPIFLLFGKLEEDRGLVRN AMKIYDRASEMVPDEDKFEMYKYYIERTIENFGLSATRPVFERAINSLPATHLKDICLDFIAVELKLGEIERVRSLYAYS SQFCDPRTTEDFWEKWSQFELEYGNEETYKEMLRIKRSVKAQFNTDIGYVAAQAVALKNQALQSNEKKISDAPVGFVASK DSQPKKVIQQPETSEEQQQQEIVNPDEIDLDMDM
GO term prediction
Biological Process
GO:0006396 RNA processing
GO:0006397 mRNA processing
Molecular Function
GO:0005515 protein binding
Cellular Component
GO:0005634 nucleus