Protein

MCA_05173_1

Length
680 amino acids

Description: Transposon derived polyprotein

Browser: contigD:532468-534549-

RNA-seq: read pairs 0, FPKM 0.0, percentile rank 0.8% (100% = highest expression)

Protein function

Annotation:Transposon derived polyprotein
EGGNOG:0PGPZto reverse transcriptase
SGD closest match:S000007347TY3B-GTransposon Ty3-G Gag-Pol polyprotein
CGD closest match:CAL0000175689POL93Pol93p

Protein alignments

%idAln lengthE-value
A0A060T683_BLAAD32.54%3384e-42ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1
UniRef50_A0A060T68332.54%3381e-38ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD
B5FVH8_YARLI29.48%3464e-33YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1
YG31B_YEAST33.33%1952e-19Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
A0A167D9C8_9ASCO30.32%1554e-15Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1
A0A1D8PC70_CANAL24.04%1832e-12Pol93p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POL93 PE=4 SV=1
A0A0J9XCS2_GEOCN34.51%1131e-07Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA10s00604g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1097

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 680

Detailed signature matches

  1. Domain IPR001878
    Zinc finger, CCHC-type
    1. SM00343 (c2hcfinal6)
    2. G3DSA:4.10.60.10
    3. SSF57756 (Retroviru...)
    4. PS50158 (ZF_CCHC)
  2. Domain IPR021109
    Aspartic peptidase domain
    1. G3DSA:2.40.70.10
    2. SSF50630 (Acid prot...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.10.10.10
  2. PF13650 (Asp_protea...)
  3. SSF56672 (DNA/RNA p...)
  4. cd00303 (retropepsi...)
  5. cd01647 (RT_LTR)
  6. mobidb-lite (disord...)

Residue annotation

  1. Catalytic residue ...
  2. catalytic motif cd...
  3. inhibitor binding ...
  4. Active site flap c...
  5. putative NTP bindi...
  6. putative active si...
  7. putative nucleic a...

Protein sequence

>MCA_05173_1
MSEGKTLDELITSAEFNSNEMLIGYPDHRTSVFPSEGDPMDLDKLDFGSNPSEFVYNVTCNKCGGIGHYASVCPSQKKDE
NTPKGGHRRRRGKEDKSCKNNKDNSGTPSKSSQRSYSPVNNSFAAPYDLDDQVDAVEDEEDDFYFNNDYQAVLSEEDSVY
SAFSSEGEDDANQTQNIKRVTPHYVAPSVTREPQAKASDVVRAHMTTSADDNSNFYQFQQSKPVDQYINDSIALNRSGSE
IPDFSDPHHSSEPIFTSTPRKSKSTLLSSPNITNPFLNNPKPGDLSDSGASLLEPPSSNYDSSLSSRLDIDDITLCSTSF
PLSLKASDVEIDSKIIVPIKIRHPVPTSARVPALVDSGASSNFISQLLFQKLKLRKFAKTIKPKDVHSAFKERNQTRFII
NLTYRIGNKPFSSTFFVIDKLSKNVILGIPFIKEFSKYINWNQSTVAGVKSLKTNNIFTNAIQFCRDVKRNSPEECFFIK
PDKPDTTYSNLPSDLKDYKEALITDSLSEFSPKRNAEHRIDIISDNKPTVRPYYRPSLEENNILVEEISKLLKTSSNRFF
TSPYSTLVLFATKKDAFYRMCIDYRVFNFITVKNRYPLPKTEDLLNNLKKAKHFSKLDLQSVYHQEKTGFPTKNGHSKFL
VTPFVSINAPIAFLHFMNDIFHTFLKIFSMPTWMTFLSSL

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.