Protein

MCA_05162_1

Length
262 amino acids

Gene name: MRPL6

Description: 54S ribosomal protein L6, mitochondrial

Browser: contigD:502103-502892-

RNA-seq: read pairs 2944, FPKM 138.3, percentile rank 83.8% (100% = highest expression)

Protein function

Annotation:MRPL654S ribosomal protein L6, mitochondrial
KEGG:K02933RP-L6 large subunit ribosomal protein L6
EGGNOG:0PNE9PGUG_02564mitochondrial 54S ribosomal protein YmL16
SGD closest match:S000001190MRPL654S ribosomal protein L6, mitochondrial
CGD closest match:CAL0000184142MRPL6Mitochondrial 54S ribosomal protein YmL16

Protein alignments

%idAln lengthE-value
MIA_05424_163.00%2277e-100MIA_05424_1
A0A0J9X6Z4_GEOCN59.38%2241e-89Similar to Saccharomyces cerevisiae YHR147C MRPL6 Mitochondrial ribosomal protein of the large subunit OS=Geotrichum candidum GN=BN980_GECA04s05719g PE=3 SV=1
A0A060T449_BLAAD57.59%2245e-84ARAD1B00220p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B00220g PE=3 SV=1
A0A161HNM0_9ASCO56.16%2198e-82Mitochondrial 54S ribosomal protein YmL16 OS=Sugiyamaella lignohabitans GN=MRPL6 PE=3 SV=1
UniRef50_A0A161HNM056.16%2192e-78Mitochondrial 54S ribosomal protein YmL16 n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A161HNM0_9ASCO
RM06_YEAST44.14%2227e-5854S ribosomal protein L6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL6 PE=1 SV=2
A0A1D8PRP9_CANAL43.84%2193e-53Mitochondrial 54S ribosomal protein YmL16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRPL6 PE=3 SV=1
A0A1E3PD07_9ASCO41.42%2393e-52Ribosomal protein L6 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48098 PE=3 SV=1
Q6C281_YARLI39.37%2212e-46YALI0F10032p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F10032g PE=3 SV=1
A0A1E4TAN0_9ASCO45.66%1733e-44Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_16593 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.9582
Predicted cleavage: 32

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 262

Detailed signature matches

  1. Family IPR019906
    Ribosomal protein L6, bacterial-type
    1. PR00059 (RIBOSOMALL6)
  2. Domain IPR020040
    Ribosomal protein L6, alpha-beta domain
    1. SSF56053 (Ribosomal...)
    2. G3DSA:3.90.93...
    3. PF00347 (Ribosomal_L6)
  3. SITE IPR002358
    Ribosomal protein L6, conserved site
    1. PS00525 (RIBOSOMAL_...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. NON_CYTOPLASM... (N...)
  2. SIGNAL_PEPTIDE (Sig...)
  3. SIGNAL_PEPTID... (S...)
  4. SIGNAL_PEPTID... (S...)
  5. SIGNAL_PEPTID... (S...)

Protein sequence

>MCA_05162_1
MSSLIRSSLVGSSTAVRTAATRLLLSSSSSTSSAFFSTSSICQSNIGSSPIAIPNEVTLSIQSKELDFITKKQMELNSKR
RGKPKINLTQVASIKGPKGEVQVELADFVKIKFEEPDPEAGDGAVRKAIVTVDKEDVTHQRQMWGTTRGLLNNGVIGVSE
GHISIIKLVGTGFRAALEKDKATNKEYLALKVGYCIPMRVEVPEGITVKLPLPHRIILEGNDKQQVRLLAANIRRFRKPE
PYKGKGIFVDGETIQLKTRKIK

GO term prediction

Biological Process

GO:0006412 translation

Molecular Function

GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding

Cellular Component

GO:0005622 intracellular
GO:0005840 ribosome