MCA_05105_1

Browser: contigD:374110-375226+

RNA-seq: read pairs 130088, FPKM 4320.9, percentile rank 99.3% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0084

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   371 - 371

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   21 - 349

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. PR01217 (PRICHEXTENSN)
   64 - 76

   PRINTS
   PR01217 (PRICHEXTENSN)

   115 - 127

   PRINTS
   PR01217 (PRICHEXTENSN)

   179 - 195

   PRINTS
   PR01217 (PRICHEXTENSN)

   227 - 252

   PRINTS
   PR01217 (PRICHEXTENSN)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 20

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   16 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   5 - 15

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 4

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-noTM
   1 - 20

   SignalP euk
   SignalP-noTM (SignalP-noTM)
9. TRANSMEMBRANE (Tran...)
   350 - 370

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    170 - 352

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    115 - 143

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    64 - 88

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_05105_1
MQFKTASVIGFIAAAQFAAAEVFQNSTVSVTEAPKTEWTTSTITITSCDDHKCHEVVTVTTCPVETTGEPSPKPTEKSTD
IVTGPPKTEWTTSTITITSCDDHKCEEVVTVTTCPVESTEEPSPKPTEQPASTDIVTGPPKTEWTTSTVTITSCDDHKCE
EVVTVTTCPVEPTSEAPKPTEEPPKPTEKPSEKPPATEWTTSTLTVTSCDDHKCETVVTVTTCPVEPTGEPEKPSKPEQP
AKPEQPEQPAKPEQPEQPAKPEQPEQPAKPEQPEQPAKPEQPAKPEQPEQPAKPEQPEQPAKPEQPEQPAKPEQPEQPAK
PEQPAKPTTPEVAQPPPTAVPTTPLPQVNGASSVNGALASVFGLAIAILFL

GO term prediction