Protein

MCA_05062_1

Length
254 amino acids

Description: protein with ribosomal L9/ ribonuclease H1 domain

Browser: contigD:265218-265983-

RNA-seq: read pairs 659, FPKM 31.9, percentile rank 54.4% (100% = highest expression)

Protein function

Annotation:protein with ribosomal L9/ ribonuclease H1 domain
KEGG:K03469rnhA ribonuclease HI [EC:3.1.26.4]
EGGNOG:0PJMDPGUG_00082ribonuclease H
SGD closest match:S000004847RNH1Ribonuclease H
CGD closest match:CAL0000184579orf19.5564Uncharacterized protein

Protein alignments

%idAln lengthE-value
A0A161HJH2_9ASCO47.02%1515e-39Ribonuclease H OS=Sugiyamaella lignohabitans GN=RNH1 PE=3 SV=1
UniRef50_A0A161HJH247.02%1511e-35Ribonuclease H n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A161HJH2_9ASCO
MIA_00166_144.30%1494e-39MIA_00166_1
A0A0J9X3A6_GEOCN37.58%1494e-30Ribonuclease H OS=Geotrichum candidum GN=BN980_GECA01s10097g PE=3 SV=1
A0A1D8PQ03_CANAL44.59%1572e-29Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5564 PE=4 SV=1
Q6CHD9_YARLI31.75%2521e-28Ribonuclease H OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A09878g PE=3 SV=1
A0A060TD98_BLAAD40.37%1614e-28Ribonuclease H OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D41536g PE=3 SV=1
A0A1E3PU38_9ASCO37.95%1663e-27Ribonuclease H OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49110 PE=3 SV=1
RNH1_YEAST31.48%1627e-14Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH1 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.6841
Predicted cleavage: 14

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 254

Detailed signature matches

  1. Family IPR017067
    Ribonuclease H1, eukaryote
    1. PIRSF036852 (RNase_...)
  2. Domain IPR009027
    Ribosomal protein L9/RNase H1, N-terminal
    1. SSF55658 (L9 N-doma...)
  3. Domain IPR011320
    Ribonuclease H1, N-terminal
    1. PF01693 (Cauli_VI)
    2. G3DSA:3.40.97...
  4. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  5. Domain IPR002156
    Ribonuclease H domain
    1. PF00075 (RNase_H)
    2. PS50879 (RNASE_H)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd09280 (RNase_HI_e...)
  2. mobidb-lite (disord...)

Residue annotation

  1. RNA/DNA hybrid bin...

Protein sequence

>MCA_05062_1
MPQTFFGVRVGRRPGIYTDLLQALKQTSNFPSADMRMFSRRYHAELYVDAGVDVSYFQEFYSSSEEEEDENEDDEEDDYY
YDHDSESSDTGGDDEPLQNVYVDGSCLGNGMYASKAGFGIWYGPDDRRNTSVTIKHGRKTNNRTELEAIMWAINREIDGC
RRRELVIHTDSKYAINCLTVYYSRWEKNGFLNANGRPVVNQELIRECRESIVKLEDQGSQVRFVHVPGHSGHEGNEAANL
LAIQGAKGQGNYKI

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0000287 magnesium ion binding
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity

Cellular Component

None predicted.