Protein
MCA_04875_1
Length
381 amino acids
Gene name: SEH1
Description: Nucleoporin SEH1
Browser: contigC:4307071-4308217-
RNA-seq: read pairs 1954, FPKM 63.2, percentile rank 70.4% (100% = highest expression)
Protein function
| Annotation: | SEH1 | Nucleoporin SEH1 | |
|---|---|---|---|
| KEGG: | K14299 | SEH1 | nucleoporin SEH1 |
| EGGNOG: | 0PGZ0 | SEH1 | Nuclear pore protein |
| SGD closest match: | S000003068 | SEH1 | Nucleoporin SEH1 |
| CGD closest match: | CAL0000180104 | SEH1 | Seh1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03421_1 | 55.03% | 398 | 3e-150 | MIA_03421_1 |
| A0A060TES7_BLAAD | 49.73% | 368 | 5e-126 | ARAD1D10340p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D10340g PE=4 SV=1 |
| A0A0J9XHP6_GEOCN | 57.01% | 314 | 5e-122 | Similar to Saccharomyces cerevisiae YGL100W SEH1 Nuclear pore protein of the conserved Nup84p complex (Nup84p, Nup85p, Nup120p, Nup145p, and Seh1p) OS=Geotrichum candidum GN=BN980_GECA15s01660g PE=4 SV=1 |
| UniRef50_A0A0J9XHP6 | 57.01% | 314 | 1e-118 | Similar to Saccharomyces cerevisiae YGL100W SEH1 Nuclear pore protein of the conserved Nup84p complex (Nup84p, Nup85p, Nup120p, Nup145p, and Seh1p) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XHP6_GEOCN |
| A0A1E3PK36_9ASCO | 46.87% | 367 | 1e-116 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_58227 PE=4 SV=1 |
| SEH1_YEAST | 44.02% | 368 | 1e-112 | Nucleoporin SEH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEH1 PE=1 SV=1 |
| Q6CED1_YARLI | 43.97% | 373 | 1e-112 | YALI0B16610p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B16610g PE=4 SV=1 |
| Q5A2S9_CANAL | 41.21% | 381 | 3e-97 | Seh1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEH1 PE=4 SV=1 |
| A0A1E4T9W5_9ASCO | 40.33% | 367 | 9e-97 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_27282 PE=4 SV=1 |
| A0A167DQV2_9ASCO | 38.10% | 168 | 2e-34 | Seh1p OS=Sugiyamaella lignohabitans GN=SEH1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0508
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
50
100
150
200
250
300
350
381
Detailed signature matches
Protein sequence
>MCA_04875_1 MSHIKAFSAGHDELIHDLNYDFYGKRIATCSSDQTIKVFEKIEPSIQQQSHPAPDSIEALQNSPEWELVDSWKAHRTTIV KVAWASPEFGQVIASCSYDGTLKIFEEDPRELKKSGRRWINRATITEFNGPVYDMAFAPSHLGLKIASIDYDGIFRVHEA MDPNNLQNWTLQPPDEKLMTSPASKSRQSAFSLSWCPSMFFKEFIAVAAQNQAYIYYRNGSGPFYRISTFPGHQVLIRSI AWAPSMGRGFQTIAIGYNDGKIEIYKVTKKQKPESTSSATVEKSGGSAIKQQLQQQSVAPAFRQLSEQDQFELSLEKASD LEGHTKEVWKLSWNVTGTILASAGSDGTIRFWKSDYNNKFQCMAEVSAEQREGPTEGMHNS
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.