Protein
MCA_04840_1
Length
812 amino acids
Gene name: TSR1
Description: Ribosome biogenesis protein TSR1
Browser: contigC:4221047-4223553-
RNA-seq: read pairs 1886, FPKM 28.7, percentile rank 51.4% (100% = highest expression)
Protein function
| Annotation: | TSR1 | Ribosome biogenesis protein TSR1 | |
|---|---|---|---|
| KEGG: | K14799 | TSR1 | pre-rRNA-processing protein TSR1 |
| EGGNOG: | 0PGXY | PGUG_01937 | Ribosome biogenesis protein tsr1 |
| SGD closest match: | S000002218 | TSR1 | Ribosome biogenesis protein TSR1 |
| CGD closest match: | CAL0000183541 | TSR1 | Tsr1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04847_1 | 54.85% | 815 | 0.0 | MIA_04847_1 |
| A0A0J9XF04_GEOCN | 50.43% | 819 | 0.0 | Similar to Saccharomyces cerevisiae YDL060W TSR1 Protein required for processing of 20S pre-rRNA in the cytoplasm OS=Geotrichum candidum GN=BN980_GECA12s02903g PE=4 SV=1 |
| A0A167FUI1_9ASCO | 49.06% | 801 | 0.0 | Tsr1p OS=Sugiyamaella lignohabitans GN=TSR1 PE=4 SV=1 |
| UniRef50_A0A167FUI1 | 49.06% | 801 | 0.0 | Tsr1p n=5 Tax=Saccharomycetales TaxID=4892 RepID=A0A167FUI1_9ASCO |
| A0A1E3PGB1_9ASCO | 46.99% | 815 | 0.0 | DUF663-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52947 PE=4 SV=1 |
| A0A060T7I2_BLAAD | 46.41% | 793 | 0.0 | ARAD1C22044p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C22044g PE=4 SV=1 |
| TSR1_YEAST | 41.44% | 789 | 0.0 | Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1 |
| Q5A346_CANAL | 39.12% | 800 | 7e-165 | Tsr1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TSR1 PE=4 SV=1 |
| A0A1E4TG99_9ASCO | 37.61% | 787 | 6e-162 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2506 PE=4 SV=1 |
| Q6CFA9_YARLI | 41.31% | 443 | 1e-91 | YALI0B08756p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B08756g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8128
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
100
200
300
400
500
600
700
812
Detailed signature matches
-
-
PS51714 (G_BMS1)
-
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_04840_1 MAVGQHHRATLKKGHKAFKSKHSSKSSLKNQQKGKIEKETTMKNKVHVQTKKDRKNTAKQILKNKVMENVNNTKFFSGIK GVSKIVSIIPLTGNIDPVEILKRILNGLGLEDNVEIKDPGLTTVYAERFKQNFTFVIPNLDNFFSVLDAAKVSDFVIFGI SATEEVGPIGESFIRSIESQGVSTVFSVINDLEDVDGAKKQSDVKESLLSYIQHFFPTIEKLYALHQQADSLNLARGLSQ KQPKGISWRDDRPYIVSDKVSWEENGDKGGLFVVEGTVRGKGLNPNRLVHIPGHGDFQIEKIVKLPKSSNKNNNKSMEID EDSNNEVVAADEEEQEDLLEVAPYDEEMEEANEEELENGFPEEEEELGVKLDNHTYFRNEYLEEIEQKAKRRVLPKFISE HQARWILDDEMLEDMAELSNFDKDPTGKQNTEEEEMAIDEEDDEQNKMEEDEDLQTKYEPTEYGDDDEAFVDLPAEDEEK QLKEFRKLAQENLQFPDEIELEPTISAKDRLRRYRGIKSLRGCHWEVDEKDDRAPEHWKRLLRVSNFRATKNRLMKEFNE QVKVEVGSLVKIYIRIDKDGDEEKYNNIVERLAKSAETLPFFTVYGLLQHEHKLAVVNFTIQQSSDYEKPIAAKETLIAQ CGFRRFVIRPVFSQSGKTPNNVYKYHRFMYPGDTVTATVIAPITFGSVATLMFKPRGTSINSKRLDLVATGTVLNADHSR VLTKRSVLTGHPFKIHKKVVTIRYMFFNREDILWFKAVPLFTRMGNSGYIKEALGTHGYFKATFDRKINPQDTVGMALYK RVWPRVASLYEY
GO term prediction
Biological Process
GO:0042254 ribosome biogenesis
Molecular Function
None predicted.
Cellular Component
GO:0005634 nucleus