MCA_04815_1

Browser: contigC:4138629-4143075-

RNA-seq: read pairs 315, FPKM 2.6, percentile rank 13.1% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0278
Predicted cleavage: 28

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   1,481 - 1,481

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   22 - 1,459

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 21

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   15 - 21

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   3 - 14

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 2

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 21

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TRANSMEMBRANE (Tran...)
   1,460 - 1,480

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
9. mobidb-lite (disord...)
   518 - 673

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   251 - 312

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   1,111 - 1,148

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   1,213 - 1,458

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   861 - 898

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   975 - 1,030

   MobiDB Lite
   mobidb-lite (disorder_prediction)

Protein sequence

>MCA_04815_1
MKGLSAILIALGSFQIAGSLASPLIRDPVYPDDSVPITKQQSTMINNLVSRQNTDGCTTLQDDNLCLFPFKNSLEACTGF
CKLIIEGALDNKATVDDSFCVPKNGEPYNDIQPGERYNYKYNNLVTACLTCAEEFDNEYAIKVREMNQECNVPFIELPAC
NEFCINPTGIAAKYLNPETCEQECTKFITDFDPMYIRDKPSNYCWGIMLNPIQINACKYCPKSSAFIDDLNNIIAGCDLI
DPNAYEIDIGEPSTTSQLSSTTTSTSTTQASTTTSTSTTQASTTTSTSTTQTSTLDASSTTESSVATSTSTSGLIPLPSN
KFCVIPMDFTEEACRNFCGTIQRQGINNKAVIDNSFCVPKNASPDSNPKPGERYKVTYSILVTACFECAKVYDNEPAAIM
REQSKECNEEVVEYPKCSERCINPKGDVAKYLDPETCEEQCTRFIDFFRRNYVFGTPSGYCWGLLSEPFKMSACKSCSNN
AGFIDDLTSLVSNCNLASPDTFWMDICSVSTSTTSEISATTISTSTVSDTTEATTTSEETTTTEATTTSEATTTSEGTTT
SEGTSTSEETSSTEQASTSQETSTAKTAFTSEETSTQETSSTDGSSSTTLSSSNTASSVRTDSSQSFDTSSTLIESSSST
DSTVISSDVDNATTKTSSFTTTSSSASTSPTNPPFTIDECKPYCAYVNEQINLISNPEQKCGILDSIDEQLVANCLRCVG
QYLELYKPGEPAKTVFDSIIECNIPPSQKDYDPIPIPGHSTWSSGSGSATATATATYTGTATPNPTQPPYTKEQCNKYCE
YLSDQLDKSTDDSQKCAVLQSPNDQFVENCLRCTESYPELTEPSQSGKKVIDQLDQCQIPKPGGPYEQVPLPGEGSQLPT
DTTSPSKTTSSQTLPTDGLLPPQNKCSIYCLYIARQLELSPLLQQCSTLEGIEEQIIANCFRCQEIYEPVAVSEPVKKVN
EAFEKCKLNPSDKPYQEVDIVQKPSPSTGGQSATTSQNGGSTHSTDTSAPVTTLSTRTSIPSSSPTNDPPFTIEQCNPYC
VYINDQISKFTDQDQQCRVLDAIDEQLVANCLRCVGTYLELYSPGQPAKNVFDELIACQIDPSKKEYDPIPIPGDISITQ
SGTASSTADSISSATSQSVGPRPTDDSFTKEQCSIYCIYISRRLELTPSPTEYCSTLQNIDDQIIANCFRCTEKYSEVAV
SPPVRKVIETFNGCNLGPSEKPYKEVPIKDWPQDSTSIPTEHSTLKHSTSTEDQGTRSATALPSSSSKASTDKPSPSSPG
SGSDGSGSDGSGSGSGSGSGSGSGSDGSGSGSGSGSDGSGSGSGSDGSGSGSDGSGSGSGSDGSGSGSDGSGSGSNGSGS
GSGSGSDGSGSGSDGSGSGSNGSGSGSGSGSGSDGSGSGSGSGAGSGSGSGDGSSSGAGSGAGSGFGSGSDGSGSGSGSG
SGSGSGSDGSNNPDIDQVNAGFKMSMSLGLSIPLLIISILF

GO term prediction