Protein

MCA_04794_1

Length
436 amino acids

Description: protein with DDE superfamily endonuclease and DNA-binding HTH (Psq-type and CenpB-type) domains

Browser: contigC:4075271-4076621-

RNA-seq: read pairs 754, FPKM 21.3, percentile rank 43.0% (100% = highest expression)

Protein function

Annotation:protein with DDE superfamily endonuclease and DNA-binding HTH (Psq-type and CenpB-type) domains
EGGNOG:0PQVYFGSG_14035conserved hypothetical protein

Protein alignments

%idAln lengthE-value
UniRef50_A0A1V6PBQ026.86%3765e-27Uncharacterized protein n=5 Tax=Penicillium antarcticum TaxID=416450 RepID=A0A1V6PBQ0_9EURO
A0A1D8PTV2_CANAL23.94%3765e-23Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR09050CA PE=4 SV=1
Q6C7B4_YARLI25.44%3381e-17YALI0E02178p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E02178g PE=4 SV=1
MIA_01692_123.92%3476e-13MIA_01692_1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0715

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 400 436

Detailed signature matches

  1. Domain IPR007889
    DNA binding HTH domain, Psq-type
    1. PF05225 (HTH_psq)
  2. Domain IPR006600
    HTH CenpB-type DNA-binding domain
    1. PF03221 (HTH_Tnp_Tc5)
    2. PS51253 (HTH_CENPB)
  3. Domain IPR004875
    DDE superfamily endonuclease domain
    1. PF03184 (DDE_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.10.60
  2. mobidb-lite (disord...)

Protein sequence

>MCA_04794_1
MFDEEQINQAIKAVSSGRMSLRGAARKFDLVSNPLSHGLDYGNKSMVSGHENQMHLTLSEEYVLLSWIFNQDSMGHTPTD
EAIKQEACRIAQSHGRNITPGKSWPASFRRRHRCLEYINERKQHRTKTIDPHSLKNFYNNVETMIGEFDVKPENMYIMDM
IKLESDESYTQENSTSSSRKSKTCTTAADPTGSPVIFIECICAIGSHINPAVIFTDSNAKTDLYKPRKSRHAPDWFVYMW
LCNVFIPNTQFEEEEEEWRILFLDNHEIHITDEFKNKCLENKAFPLYLPPDLANVLQSPEADSFYVVKDCYKTKACEKIQ
STKQLLDNEACAILWNQSRKKKLTSFLIQNLFRLTGIYPLDYNIVQPSGSSFRPFTKDDKRVRKIPDSDFDNILDELYEM
KKKGDINTEAYFEVRKMILKQHKELMELREKRDEWT

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0003677 DNA binding

Cellular Component

None predicted.