MCA_04778_1

Browser: contigC:4004633-4005710+

RNA-seq: read pairs 3362, FPKM 115.7, percentile rank 81.1% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.3674

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   358 - 358

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   24 - 338

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 23

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   17 - 23

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   5 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 4

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 23

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TMhelix
   340 - 357

   TMHMM
   TMhelix (TMhelix)
9. TRANSMEMBRANE (Tran...)
   339 - 357

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    35 - 68

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    136 - 259

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    92 - 119

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_04778_1
MVQKTLLSTIILCAAASSSIVSAAPVSPEVSSLEVYQEKSQSTDATTKDASDESVNKNNNNNNKDCDRLHPWLSPLQALL
LPAKLHLQLHSKKDDASDKDKRQVAADENSGFNSTTSSISYDSTYTYVTVMTSTVSQTPTTTSSSEESSTISTPETSSAS
SEAPSTTSSEQESSSSTEDSSSTTTEEPSSSEPESTTSTVYETSSEEEQSSSTTTETEQSSTTTTTTTTSEESESTSEES
SSSSSSSEDDDVIYTTDSPSTTIVTSSAVTDIVLETSSGSTRTMTRVTYVLMTITPTPSPRPVKTSATTNSVVAGSLQTN
ENSGALTLVAFDSSFKMKVLSSLYLGAFVLFGFAWIFV

GO term prediction