Protein

MCA_04766_1

Length
126 amino acids

Gene name: SNU13

Description: 13 kDa ribonucleoprotein-associated protein

Browser: contigC:3980007-3980388+

RNA-seq: read pairs 18878, FPKM 1836.7, percentile rank 97.7% (100% = highest expression)

Protein function

Annotation:SNU1313 kDa ribonucleoprotein-associated protein
KEGG:K12845SNU13 U4/U6 small nuclear ribonucleoprotein SNU13
EGGNOG:0PMV3SNU13small nucleolar ribonucleoprotein SNU13
SGD closest match:S000000752SNU1313 kDa ribonucleoprotein-associated protein
CGD closest match:CAL0000183109SNU1313 kDa ribonucleoprotein-associated protein

Protein alignments

%idAln lengthE-value
MIA_03709_196.03%1261e-86MIA_03709_1
A0A060T2Q5_BLAAD91.13%1247e-79ARAD1C29986p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C29986g PE=4 SV=1
SNU13_YARLI88.10%1262e-7913 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SNU13 PE=3 SV=1
A0A0J9XG32_GEOCN87.30%1265e-78Similar to Saccharomyces cerevisiae YEL026W SNU13 RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing OS=Geotrichum candidum GN=BN980_GECA14s01429g PE=4 SV=1
A0A1E3PPM5_9ASCO87.20%1251e-7613 kDa ribonucleo protein-associated protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_69204 PE=4 SV=1
A0A167C1G8_9ASCO86.89%1222e-74RNA binding protein SNU13 OS=Sugiyamaella lignohabitans GN=SNU13 PE=4 SV=1
SNU13_YEAST80.95%1264e-7313 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU13 PE=1 SV=1
UniRef50_P3999080.95%1261e-6913 kDa ribonucleoprotein-associated protein n=209 Tax=Eukaryota TaxID=2759 RepID=SNU13_YEAST
SNU13_CANAL81.75%1268e-7313 kDa ribonucleoprotein-associated protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNU13 PE=3 SV=1
A0A1E4TBU1_9ASCO74.60%1268e-68Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_135297 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0178

Protein family membership

Domains and repeats

  1. Domain
1 20 40 60 80 100 126

Detailed signature matches

  1. Family IPR018492
    Ribosomal protein L7Ae/L8/Nhp2 family
    1. PR00881 (L7ARS6FAMILY)
  2. Family IPR002415
    H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
    1. PR00883 (NUCLEARHMG)
  3. Domain IPR029064
    50S ribosomal protein L30e-like
    1. SSF55315 (L30e-like)
    2. G3DSA:3.30.13...
  4. Domain IPR004038
    Ribosomal protein L7Ae/L30e/S12e/Gadd45
    1. PF01248 (Ribosomal_...)
  5. SITE IPR004037
    Ribosomal protein L7Ae conserved site
    1. PS01082 (RIBOSOMAL_...)

Protein sequence

>MCA_04766_1
MSAPDARAFPLADAELTNQILDLIQQASHLRQLKKGANEATKTLNRGISEFIVMAADASPIEIVLHLPLLCEDKNVPYVF
VPSKVALGRACGVSRPVISASVTSNDASQLKGQIIQIKDKIERLLI

GO term prediction

Biological Process

GO:0042254 ribosome biogenesis

Molecular Function

GO:0003723 RNA binding

Cellular Component

GO:0005730 nucleolus
GO:0030529 intracellular ribonucleoprotein complex