Protein

MCA_04617_1

Length
872 amino acids

Gene name: RAD54

Description: DNA repair and recombination protein RAD54

Browser: contigC:3519732-3522351+

RNA-seq: read pairs 1197, FPKM 16.9, percentile rank 36.9% (100% = highest expression)

Protein function

Annotation:RAD54DNA repair and recombination protein RAD54
KEGG:K10875RAD54L DNA repair and recombination protein RAD54 and RAD54-like protein [EC:3.6.4.-]
EGGNOG:0PG5PRAD54dna repair and recombination protein
SGD closest match:S000003131RAD54DNA repair and recombination protein RAD54
CGD closest match:CAL0000186557RAD54DNA-dependent ATPase

Protein alignments

%idAln lengthE-value
MIA_04355_179.28%8880.0MIA_04355_1
A0A0J9XDM8_GEOCN68.88%9030.0Similar to Saccharomyces cerevisiae YGL163C RAD54 DNA-dependent ATPase that stimulates strand exchange OS=Geotrichum candidum GN=BN980_GECA11s00164g PE=4 SV=1
UniRef50_A0A0J9XDM868.88%9030.0Similar to Saccharomyces cerevisiae YGL163C RAD54 DNA-dependent ATPase that stimulates strand exchange n=8 Tax=Ascomycota TaxID=4890 RepID=A0A0J9XDM8_GEOCN
A0A1E3PQ44_9ASCO65.02%8490.0DNA repair protein, SNF2 family OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_21049 PE=4 SV=1
A0A167CNW1_9ASCO61.52%8550.0DNA-dependent ATPase RAD54 OS=Sugiyamaella lignohabitans GN=RAD54 PE=4 SV=1
Q5AKX3_CANAL60.49%8580.0DNA-dependent ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD54 PE=4 SV=1
Q6CFF5_YARLI57.55%8810.0YALI0B07513p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B07513g PE=4 SV=1
A0A1E4TBN9_9ASCO57.31%8760.0Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_27244 PE=4 SV=1
A0A060T4F2_BLAAD54.58%8850.0ARAD1A16698p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A16698g PE=4 SV=1
RAD54_YEAST54.53%9060.0DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2444
Predicted cleavage: 12

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 100 200 300 400 500 600 700 800 872

Detailed signature matches

  1. Domain IPR013967
    Rad54, N-terminal
    1. PF08658 (Rad54_N)
  2. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  3. Domain IPR014001
    Helicase superfamily 1/2, ATP-binding domain
    1. PS51192 (HELICASE_A...)
    2. SM00487 (ultradead3)
  4. Domain IPR000330
    SNF2-related, N-terminal domain
    1. PF00176 (SNF2_N)
  5. Domain IPR001650
    Helicase, C-terminal
    1. PS51194 (HELICASE_CTER)
    2. SM00490 (helicmild6)
    3. PF00271 (Helicase_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.40.50...
  2. G3DSA:3.40.50...
  3. cd00046 (DEXDc)
  4. cd00079 (HELICc)
  5. mobidb-lite (disord...)

Residue annotation

  1. ATP binding site c...
  2. putative Mg++ bind...
  3. nucleotide binding...
  4. ATP-binding site c...

Protein sequence

>MCA_04617_1
MRRHAAPSQRSNTLPATNDELAHATKKLKPDPKTILTQPFRIPRPTTAASISRRGAPVRRARTVVTYREDFTEKDSEDIS
FFDSQLGRDPSKCRLGVRSRILIRSTTTGSESSQPNIVVEGIQNTNSALSVLTNKFHVPIKEFYKDGENRPPPPALGTKR
QATFVPRPLHDPTAEFAIVLYDPTIDKDPEEEEDSANTDTPEPSSTSSTPPLPSPPSSNPSPSTLSKRPQKSLAEILGID
NDKSKVKKYPNVPVVIDPRLSKILRPHQIEGVKFLYKCCTGRVVPKAYGCIMADEMGLGKTLQCIALMWTLLKQSPQGSR
HATIQKCVIACPSSLVRNWANELDKWLGKGTLTPLAIDGGKGSKATGVGSNAGTSSNKNNGIVATAIRQWANATGRQIVR
PVLIISYETLRRNVDDLKNTEIGLLLCDEGHRLKNGDSLTFTALDSLNCKRRVILSGTPIQNDLSEYFSLLNFANPGLLG
SRHEFRKNYELDILRGRDADATDDQVEKGTKKLQELSRIVGPLIIRRTNDILSKYLPVKYEHVVFCNLAPIQKSLYSHFI
SSPEIKKLLRGTGSQPLKAIGLLRKLCTHPDLLDLPGDIEGSEDILPEDFVPKEMRGRSDREVKTWYSGKLTVLERMLAR
IRQDTNDKIVLISNFTQTLDIIERMCRTNRYGCLRLDGTLSINKRQKLVDKFNNPENLDDFVFLLSSKAGGCGINLIGAN
RLILLDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSMKQSLSSCVVDEKEDVDRLFSIDNLRQLFT
FQPDTTCDTHDSFKCKRCKDGKQIIRAPAILYGDANSWNHFTNPALEKIQDLLLRQECGNDIVSFVFQYISH

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005524 ATP binding
GO:0016817 hydrolase activity, acting on acid anhydrides

Cellular Component

None predicted.