Protein
MCA_04610_1
Length
643 amino acids
Browser: contigC:3504834-3506766+
RNA-seq: read pairs 1114, FPKM 21.4, percentile rank 43.0% (100% = highest expression)
Protein function
| EGGNOG: | 0PNPM | PGUG_04755 | RNA-binding protein involved in post-transcriptional regulation through transcript degradation |
|---|---|---|---|
| SGD closest match: | S000005886 | VTS1 | Protein VTS1 |
| CGD closest match: | CAL0000193097 | VTS1 | Protein VTS1 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XAQ3_GEOCN | 74.36% | 117 | 8e-52 | Similar to Saccharomyces cerevisiae YOR359W VTS1 Flap-structured DNA-binding and RNA-binding protein OS=Geotrichum candidum GN=BN980_GECA07s03343g PE=4 SV=1 |
| UniRef50_A0A0J9XAQ3 | 74.36% | 117 | 2e-48 | Similar to Saccharomyces cerevisiae YOR359W VTS1 Flap-structured DNA-binding and RNA-binding protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XAQ3_GEOCN |
| A0A167ERC6_9ASCO | 52.32% | 151 | 5e-39 | Vts1p OS=Sugiyamaella lignohabitans GN=VTS1 PE=4 SV=1 |
| MIA_00022_1 | 62.96% | 108 | 1e-36 | MIA_00022_1 |
| A0A060T2H4_BLAAD | 55.12% | 127 | 6e-36 | ARAD1A08360p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A08360g PE=4 SV=1 |
| VTS1_YARLI | 68.42% | 76 | 2e-28 | Protein VTS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VTS1 PE=3 SV=1 |
| A0A1E3PJI8_9ASCO | 48.60% | 107 | 3e-25 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_78337 PE=4 SV=1 |
| VTS1_CANAL | 61.29% | 62 | 6e-20 | Protein VTS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VTS1 PE=3 SV=2 |
| A0A1E4TF06_9ASCO | 67.27% | 55 | 3e-19 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_12739 PE=4 SV=1 |
| VTS1_YEAST | 55.93% | 59 | 2e-14 | Protein VTS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTS1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1688
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
643
Detailed signature matches
-
-
SSF47769 (SAM/Point...)
-
no IPR
Unintegrated signatures
-
-
-
cd09556 (SAM_VTS1_f...)
-
mobidb-lite (disord...)
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_04610_1 MSSRARPTSEIFFLNPPRLQQEPSESDQVDRVTEQWLADLELYQSTLEEMASANVDKEFKDELDAIQQWFEVLSVGERTA AIYALLQQTTQVQVRFFITVLQKMAKNDALSGVLSPTTAERDPAFDFNPVPNNSAFRQSQMMPPPPPQTLSHQHQSSLTS ANQTIFPINSSPKFHGFATSAPFDPSKSPSAAGSMSKHFGAYSSQQQQDSLYNNRSATPLSRFASPTPDFPHYAPLPQPT TPHHQHTSSNVSNFSDMSGLPLTSHIQHLKQQPMKDFTPWAHMDEIHRPKSADVTLSSSMLSSSASLTSTSGNPNSNLKF KNTSLSANRNHFNNSTSPPQPSALSRQSQMPLYGTDPSMAAVGNGISFKNPETYSSWSGYPPLPTSSSPAPFPNSVKVNS EIANNTALKLAALSTVNNRAIIDNDTKKYRKKSQFSDDLTNATNFVRPVPLYPQSSNNASEEQKDSSNSNNNNNFTFPDK GNGNINNNNSYNSHNHSNSNDNKLRSKQQQQQQQQPQQQQQQQHQQPTNNRSSLDSNNENPSKPNSASSAGNTATTSAGS AKNSKNNDAYLSLELLQDVAAWLKVLRLHKYTPNLKDLNWKDLVQLSDEELEKRGVSALGARRKMLKVFESVREADKTGT LLP
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.