Protein
MCA_04581_1
Length
309 amino acids
Description: Protein with RNA recognition motif domain
Browser: contigC:3432500-3433430+
RNA-seq: read pairs 1075, FPKM 42.8, percentile rank 61.9% (100% = highest expression)
Protein function
| Annotation: | Protein with RNA recognition motif domain | ||
|---|---|---|---|
| EGGNOG: | 0PGNI | FG01110.1 | RNP domain protein |
| SGD closest match: | S000004961 | PUB1 | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 |
| CGD closest match: | CAL0000185681 | orf19.444 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03103_1 | 56.80% | 169 | 1e-55 | MIA_03103_1 |
| A0A1E3PCW3_9ASCO | 57.25% | 131 | 4e-44 | RNA-binding domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_29307 PE=4 SV=1 |
| UniRef50_A0A1E3PCW3 | 57.25% | 131 | 1e-40 | RNA-binding domain-containing protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PCW3_9ASCO |
| A0A060TGZ2_BLAAD | 58.87% | 124 | 5e-43 | ARAD1D27016p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D27016g PE=4 SV=1 |
| Q6C9W1_YARLI | 60.00% | 125 | 5e-42 | YALI0D07876p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D07876g PE=4 SV=1 |
| A0A167DYW2_9ASCO | 51.06% | 141 | 5e-40 | Nam8p OS=Sugiyamaella lignohabitans GN=NAM8 PE=4 SV=1 |
| A0A0J9XEF8_GEOCN | 53.28% | 122 | 5e-39 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA12s00516g PE=4 SV=1 |
| Q5A297_CANAL | 57.78% | 90 | 4e-31 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.444 PE=4 SV=1 |
| A0A1E4TCC7_9ASCO | 53.33% | 90 | 1e-28 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_15279 PE=4 SV=1 |
| PUB1_YEAST | 39.51% | 81 | 5e-08 | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUB1 PE=1 SV=4 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.9554
Predicted cleavage: 21
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
309
Detailed signature matches
-
-
cd12383 (RRM_RBM42)
-
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_04581_1 MSSSGWRKSFKPKGSSFTRPSTKTPGSLLQSSTVKQNTSTATSGNLPQQIPVKSENFKVGKSDIKTRKGFHSISKKKNVD TEKKQTEELGRSTADQGNGENQEASIALSTQGSISVLPAPTVELPPPEPSLIPIGPQIVKPTVAPVTKLIDTSVPSVIGP RPAPASQNTSRVMESTEPESNALTVVRQRAGMTWHDPTLLAWDPSHFRLFVGNLSNDVTEEMLKTAFTKDNRYPSLSKVR VVCDSKPPFKPKGYGFVSFGSSDDYFKAFKEMNGKYVGNHPIQLKKANTEIKPVVVSKNSGHRKNNRRR
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.