Protein
MCA_04530_1
Length
514 amino acids
Gene name: NMD3
Description: 60S ribosomal export protein NMD3
Browser: contigC:3297073-3298618+
RNA-seq: read pairs 1574, FPKM 37.8, percentile rank 59.1% (100% = highest expression)
Protein function
| Annotation: | NMD3 | 60S ribosomal export protein NMD3 | |
|---|---|---|---|
| KEGG: | K07562 | NMD3 | nonsense-mediated mRNA decay protein 3 |
| EGGNOG: | 0PFAM | PGUG_04074 | 60S ribosomal export protein NMD3 |
| SGD closest match: | S000001213 | NMD3 | 60S ribosomal export protein NMD3 |
| CGD closest match: | CAL0000185434 | NMD3 | Ribosome-binding protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05285_1 | 78.02% | 505 | 0.0 | MIA_05285_1 |
| A0A0J9XFD3_GEOCN | 70.56% | 462 | 0.0 | Similar to Saccharomyces cerevisiae YHR170W NMD3 Protein involved in nuclear export of the large ribosomal subunit OS=Geotrichum candidum GN=BN980_GECA13s01781g PE=4 SV=1 |
| A0A1E3PNP3_9ASCO | 65.80% | 462 | 0.0 | NMD3-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_23666 PE=4 SV=1 |
| Q6C2G2_YARLI | 66.89% | 450 | 0.0 | YALI0F08151p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F08151g PE=4 SV=1 |
| A0A1E4TGC9_9ASCO | 65.19% | 451 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_111251 PE=4 SV=1 |
| A0A167FWC1_9ASCO | 66.96% | 457 | 0.0 | Ribosome-binding protein NMD3 OS=Sugiyamaella lignohabitans GN=NMD3 PE=4 SV=1 |
| UniRef50_G8BX21 | 65.43% | 457 | 0.0 | Uncharacterized protein n=180 Tax=Fungi TaxID=4751 RepID=G8BX21_TETPH |
| NMD3_YEAST | 62.80% | 465 | 0.0 | 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3 |
| Q59PZ4_CANAL | 61.54% | 481 | 0.0 | Ribosome-binding protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NMD3 PE=4 SV=1 |
| A0A060T6N2_BLAAD | 61.42% | 451 | 0.0 | ARAD1B20328p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B20328g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0263
Protein family membership
- NMD3 (IPR007064)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_04530_1 MSYDHQLTPFSGGGTMIPQTVCTVLCCNCGQPMVGTSGIVMCQDCIRLTTDIAAGIPKEANLSFCRNCERFLQPPSQWLA VQPESRELLALCLRRLRGLNKVKLTNAKFIWTEPHSRRIKVKLSVQGEGPQNTIIEQSFEVQYMVNAMQCPDCARSFTVN TWRACVQLRQKVAHKRTFFYLEQLILKHNAHVNTVSIKETRDGLDFYFSTPNHAINMLSFLENVAPIRYKRSEELISTDT HTATKNYKFTFSVEIAPICRDDLVFLPLSVARSLHNISPVVICSKVSNTLQFLDPNTLEVASLDPSVYWRVPFASLADSS QLVEFIVLNVEPLGPMRGRLALADIEVARASDISRNTQSYQLRTHLGGLLKPGDSVLGYFLVNSNFNSREFDSVNAERIP DVVLVKKHYPGKRKNRGRKWKLKRMAKEHNIEDDERVTKNDLDKVEQDYEAFLQELEEDQELRSTINLYKSNNVKPRRDV DSMEEDDEEEENPNVPQVSLDELLDDLEDLNIGN
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.