Protein
MCA_04529_1
Length
2,274 amino acids
Gene name: CDC39
Description: Subunit of the CCR4-NOT1 core complex
Browser: contigC:3289062-3296222-
RNA-seq: read pairs 4653, FPKM 25.3, percentile rank 47.9% (100% = highest expression)
Protein function
| Annotation: | CDC39 | Subunit of the CCR4-NOT1 core complex | |
|---|---|---|---|
| KEGG: | K12604 | CNOT1 | CCR4-NOT transcription complex subunit 1 |
| EGGNOG: | 0PIRN | PGUG_04019 | Ccr4-not transcription complex, subunit |
| SGD closest match: | S000000689 | CDC39 | General negative regulator of transcription subunit 1 |
| CGD closest match: | CAL0000177338 | CDC39 | CCR4-NOT core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A167FWD5_9ASCO | 39.53% | 2064 | 0.0 | CCR4-NOT core subunit CDC39 OS=Sugiyamaella lignohabitans GN=CDC39 PE=4 SV=1 |
| UniRef50_A0A167FWD5 | 39.53% | 2064 | 0.0 | CCR4-NOT core subunit CDC39 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167FWD5_9ASCO |
| MIA_05284_1 | 53.37% | 1040 | 0.0 | MIA_05284_1 |
| A0A1E4TK62_9ASCO | 31.94% | 1963 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_717 PE=4 SV=1 |
| A0A1E3PN34_9ASCO | 38.61% | 1391 | 0.0 | Not1-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50757 PE=4 SV=1 |
| A0A1D8PQD2_CANAL | 33.35% | 1610 | 0.0 | CCR4-NOT core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CDC39 PE=4 SV=1 |
| A0A060T7L4_BLAAD | 45.96% | 792 | 0.0 | ARAD1B20306p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B20306g PE=4 SV=1 |
| Q6C0P0_YARLI | 41.75% | 855 | 1e-174 | YALI0F23045p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F23045g PE=4 SV=1 |
| NOT1_YEAST | 26.44% | 1074 | 3e-113 | General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0026
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
500
1000
1500
2000
2274
Detailed signature matches
no IPR
Unintegrated signatures
-
CYTOPLASMIC_D... (C...)
-
-
-
NON_CYTOPLASM... (N...)
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TRANSMEMBRANE (Tran...)
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mobidb-lite (disord...)
Protein sequence
>MCA_04529_1 MNTGPSDSSSSSTTPTGTNSSTHSSNTNKNSELTQIVVAQLTVLSTTIRDENWDSTVNHIHQLLNQNGPEVYARFFRRLV ASCSSIIFNSSNSYSPASSSTHIPGNKNDHIPSTLRLLTQEVNSLSTDPSLTYRFATSVSLERDQIKNFDLPTFLDYFQL DAFQKTLLCIAVKNFTPIDKYRDQAYQILESQFTTFIQIISNKDKYTKEFSPSLLSTVFNEYKASPVPPFFSTQQESLFL KTIINRISLENITPELQASYNRLFPSNKTMSSLISLLKTELIDKPLDDSYGSTKLSQQQLSDEISKLGTVSNEDLAKTLI FLSNFPTWDGSLLGNALKSSKNVTPISDWQSFYSNFSSEVDFESIHYKFNLTTSSFPDFLKTLVIFDKNSIIEFYQYNWA PPLDLAVCIGSFFVPHEKFSFKENGLSPILLPKIFNEAPLQIADRAAFLIDHPFNILPIVHAFLRAVANEKGQGLATSFL DQNGKSIPELFFFGALTMPKPTHSIIERVLDNLFELSLTKHIDGQVTFYALPFFDKPFLIKRLVDHYYKDPLAVNYIFEA AKIANIISDLLTLEHSTFTLEIASTADKLKIPGIDFPLFLKRKAQSGGPSFIAALLDFLELKASIEYASHQNPNNTPSGL DIRTVSAAIYFLCTAPIPPEKAELFKNIQFQCLQAYPRLINFGQGHDEAILSHQNSNSFSSAVEQEMKIHYQRMYEGQIE IRDIITMLQRLKQSKDPYEQDVFACMVHSLFDEYKFFPEYPLNALATTAVLFGSLIYFQLIDGLPLRIAFRFILQSLKRP VDSNMFKFGLQALFEFRERLPEFPKYCCSLLDVPGLQMHPQFYQQIKDIVGSTVNTVYMGDISNNSFLFTSINIDVGIPE EPVQEEPPETVKEAVMFLVNNLAPDTLKDKSKKLSSSLQVIHYRWFASYIVAQRAKQEPNFHSIYIDLLNILDAKLLDLY FTQVTYFEIAKLIRSPDTEESQDKRKFLRNLGLWLGSLTLQRNRPILHRNIAFKKLLCEAFDEHRLGSVVPFVCKVLTAC SNSVVFAPPNPWLLGILKVLMELYQFADLKLNLKFEIEVLCKDLNIDMETIEPSFIIRNYLSQDLDLPSVNLSAEMQNMN INKETIPVNQGVTLPRNQLIPPSAVPASVPTSEDVAAILARQQEQQEQQQQQEQQLYEINLLYYLELASRLDPVSKTGIT IHPAFKQMFAEALKRSITDSLAIIIDRSASIAVISTRALILKDFAMEPSEEKLRQSAHKMVSTFAGSHAVASSKDAIKES LTSNFRAQLLASRSYNESNIPMDKVNDAINENMDGVCAILQSASIDRAILQIDDLLKMDYAKRQEYAKSGSTQPFQDNVS SYNLHLPEPFRLRPGGLTPNQFAIYEAFGHFKPFADSSLQGAETDQRHNTALNASITSAKSVTNAQTLIPAASNYLPNGA NSGTPAAAILAQTPGATRAADESTGALFNSVEMDPNAKILFESSLKQAEEFIISLYKIILDSPHSSFTEMEPNHSIFQDL SVILNFCETTAVSCDIFYDSVCNIIVTLLFTEPQTKFSSEILVLLLQNLTSKYPFVFKAVIDRVMLSENYERFSNVEVVA AFVKLRFFSWPYYDQYLGEAINKDKSGKVIKFATKLIEEAVLASSPLALRSDFAYSLESLKAFTSDPKIDADNDVKEDLK KSTSSLFKQLEQYEHFSIDDEDADKQVELIFAEWIHLVQRPGSKSSFHDSFVSQLAERGILADSDVITLLIRKGMEISKA RYAEILTEKQILEQQSRTTNQPLPEPNASEYETVDSLAQLVACIFKSNFHLSESKQMSYAKLLLTVVAMMLCNDHESQDE NLGQKVYFRFFFSLSCELSQMITENPSAGSIYLVLADIFLVLQPIGVPGFVFSWISLISGKYFMPQLLTIPEKKGWGPMV QLLNSLLRFQTVYAQGKEFPGYIASIYKGTLKLFIVLLNDFPDLTIEYHWVLTKNLAPSYVQLRNLILSTFPKNMELPDP LTQGLKVDRLPQIRSSPVVAIDPSIEMESLGLKDLVDEYLKSPNVAIARGIIKGLSLKEPVHESGLGFDIVTIDNSAMNA LALYIVMDASKDSLDGDSTPQFSRDMPHLALISTLLLELTVEGQYFFCGAMANQLRYPNRHTHFYICVFLMLFGSYGTAI FDERKDEIRQVITRVLLERIMCNRPHPWGLTITFTELLKNNTYKFWELSFIKTHPDIERMFSSLFEHITKGNLTTESNGN SANPSSTPSQSSNSSNTTKTTETVANTISAAAAN
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.