MCA_04459_1

Browser: contigC:3106705-3107665-

RNA-seq: read pairs 101, FPKM 3.9, percentile rank 15.6% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.8042
Predicted cleavage: 35

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   63 - 242

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)

   312 - 319

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   263 - 292

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)

   21 - 43

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 20

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   17 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   5 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 4

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. TMhelix
   4 - 23

   TMHMM
   TMhelix (TMhelix)

   44 - 66

   TMHMM
   TMhelix (TMhelix)

   294 - 316

   TMHMM
   TMhelix (TMhelix)
8. TRANSMEMBRANE (Tran...)
   44 - 62

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)

   293 - 311

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)

   243 - 262

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)

Protein sequence

>MCA_04459_1
MKSSITAICITCSILVSLFCSIIRRRIVTFDYGSQTDLNAYQTIVSPLYLSGVVAVLSNFIYSYGYDLIFHEYFNQQYNF
LPSSSSSSSFIRSIWESLNDNFDSWYLCLLSTFHCLNLTKHSKGYQKILPSINQFFKGSIKFPDFASTWSLNNVKAQLDL
IAKTGGGGYFQFLKYCAKYILAFISMKMIRVFNFEKINWSDYFLVGDDDDFKTWSGDEMVTLINATDYEVNEKNIKEKQQ
QNLLKAIILELFIGNLVELVMVDGFCDRFFARNSGVDLEYRVYDVFELCNLKLLAAWFIIELLGQFTIYIGHKFYISVR

GO term prediction