MCA_04429_1

Browser: contigC:3028464-3029184-

RNA-seq: read pairs 11, FPKM 0.6, percentile rank 7.3% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0943

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   239 - 239

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   21 - 219

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 20

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   17 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   5 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 4

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. TMhelix
   219 - 238

   TMHMM
   TMhelix (TMhelix)

   5 - 27

   TMHMM
   TMhelix (TMhelix)
8. TRANSMEMBRANE (Tran...)
   220 - 238

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
9. mobidb-lite (disord...)
   98 - 144

   MobiDB Lite
   mobidb-lite (disorder_prediction)

Protein sequence

>MCA_04429_1
MKFKTITTVIFSSSLLSVYALTISAIVTKDSSLSSHASSSSITSTPSTTFVSATITQKPPSTFTSSSALTTANIAKKDRP
LDIIIGPPQTKDKALEIIFGPQPDPPYPELTPISTYPNLPQEQVAPPPPPPPPPPPPPADVGAPMAITTTTSRRWYNIET
EPGWPGKSLTPRVSRTPFKSSYWPEPTIHYWMPDPNPWKEGNLRASLAAAAAAPHHPTGFVNSVSSILLYTFGVLLWLV

GO term prediction