MCA_04390_1

Browser: contigC:2863570-2864449-

RNA-seq: read pairs 25, FPKM 1.1, percentile rank 9.4% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0747

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   292 - 292

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   18 - 273

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 17

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   14 - 17

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   3 - 13

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 2

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 17

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TRANSMEMBRANE (Tran...)
   274 - 291

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
9. mobidb-lite (disord...)
   207 - 253

   MobiDB Lite
   mobidb-lite (disorder_prediction)

   126 - 187

   MobiDB Lite
   mobidb-lite (disorder_prediction)

Protein sequence

>MCA_04390_1
MKFSLTLLFSLILTVSAQKQYDYTYEEWEDICFNAYRIPGSCSHGGGTRPEIFPGCLGCRPGNVDEDYFVGNATKCGSPD
APKDLRLRYYTRMRRAFVVCGLDYYIADFAESLTYDTFFNTHVPTQTNTEASSSSSSSTLSSQPFETTQSSFSSSTEPPS
DSNGPTSLLETSTSLQESSTTEVVTTSEAPVSSEIFINSTTQIPDTVFSSSSSSSSSSLSTSTEIPSTTTTDSIEETTPV
VTQTSTESTTEKVTVVPTTTTASTTLDQANISNIKLVPFDILLIALIGMILM

GO term prediction