Protein

MCA_04285_1

Length
456 amino acids

Browser: contigC:2595861-2597232-

RNA-seq: read pairs 802, FPKM 21.7, percentile rank 43.5% (100% = highest expression)

Protein function

KEGG:K20826RPAP1 RNA polymerase II-associated protein 1
EGGNOG:0PI3MPGUG_03683transcription factor Rba50
SGD closest match:S000002935RBA50RNA polymerase II-associated protein RBA50
CGD closest match:CAL0000195799orf19.4133Uncharacterized protein

Protein alignments

%idAln lengthE-value
MIA_02281_149.02%4572e-112MIA_02281_1
A0A0J9XG13_GEOCN54.33%2544e-79Similar to Saccharomyces cerevisiae YDR527W RBA50 Protein involved in transcription OS=Geotrichum candidum GN=BN980_GECA12s03156g PE=4 SV=1
UniRef50_A0A0J9XG1354.33%2547e-76Similar to Saccharomyces cerevisiae YDR527W RBA50 Protein involved in transcription n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XG13_GEOCN
A0A167C9T9_9ASCO52.45%2041e-63Rba50p OS=Sugiyamaella lignohabitans GN=RBA50 PE=4 SV=1
Q6C4H3_YARLI54.79%1884e-60YALI0E26807p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E26807g PE=4 SV=1
A0A1E3PF27_9ASCO50.52%1941e-52Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52998 PE=4 SV=1
A0A060TDM3_BLAAD53.76%1736e-52ARAD1D01408p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D01408g PE=4 SV=1
A0A1D8PN59_CANAL45.05%2028e-45Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4133 PE=4 SV=1
RBA50_YEAST46.07%1912e-44RNA polymerase II-associated protein RBA50 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBA50 PE=1 SV=2
A0A1E4TEB5_9ASCO45.12%1646e-45Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_14934 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1638

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 400 456

Detailed signature matches

  1. Domain IPR013930
    RNA polymerase II-associated protein 1, N-terminal
    1. PF08621 (RPAP1_N)
  2. Domain IPR013929
    RNA polymerase II-associated protein 1, C-terminal
    1. PF08620 (RPAP1_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_04285_1
MNGMISDIVEKFDDNEDSFNPPVPPPTFDLKKNQSFPKPSSKKFASWKERKKEIDRRKAQEQMERQMMESDNDEEEEEQT
NSLEKSEIANALRKANSKHKSDKDFTESERIHIENLERLMKMSEEEIEAEKSELMAMMDEKVLRKLLDRAIAKEQANDGM
LDNEEVDHALGVLAEKDKSEKAPHEQQQQQEKKKKKSVSFDVKTKNEPTKKKKKDLSTFSIQDVGVEGLDDDERYPTFEQ
LQQIQKEFDEASNVSKQREANVHFPKDTTGDDLDPNDDQFLDKLHAKYFPSLQAEPEKLEWMMSSKKMAKDDIEAEYSET
RDGLYPKEIRFDFKGNILSPRQSKQLPTYLGLHHHGDQPDAAGYTIPELAHLARSSVNSQRSIAIQTLGRILYKLGRGEY
GSQIGAGLWGLVDQGRVIDSITEASDEKKTSSMTVRAYAVEALWLWQQGGGARPAV

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.