Protein

MCA_04186_1

Length
938 amino acids

Gene name: RAD16B

Description: DNA repair protein, SNF2 family helicase

Browser: contigC:2301739-2304556+

RNA-seq: read pairs 455, FPKM 6.0, percentile rank 19.1% (100% = highest expression)

Protein function

Annotation:RAD16BDNA repair protein, SNF2 family helicase
EGGNOG:0QDFWSNF2 family helicase ATPase
SGD closest match:S000000318RAD16DNA repair protein RAD16
CGD closest match:CAL0000195175RAD16DNA repair protein

Protein alignments

%idAln lengthE-value
Q6C733_YARLI52.43%5555e-176YALI0E04136p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E04136g PE=4 SV=1
UniRef50_Q6C73352.43%5551e-172YALI0E04136p n=2 Tax=Yarrowia lipolytica TaxID=4952 RepID=Q6C733_YARLI
A0A161HIE7_9ASCO50.64%5492e-162DNA repair protein RAD16 OS=Sugiyamaella lignohabitans GN=RAD16 PE=4 SV=1
A0A1E3PQB1_9ASCO46.19%5916e-160Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_64738 PE=4 SV=1
MIA_03611_146.42%5735e-155MIA_03611_1
A0A060T8A4_BLAAD47.74%5303e-157ARAD1D05258p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D05258g PE=4 SV=1
A0A0J9XHT9_GEOCN52.09%5519e-157Similar to Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (With Rad7p) during nucleotide excision repair OS=Geotrichum candidum GN=BN980_GECA17s01132g PE=4 SV=1
A0A1E4THK3_9ASCO42.46%5703e-140Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_12534 PE=4 SV=1
RAD16_YEAST31.03%6386e-78DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1
Q5AI84_CANAL29.55%6434e-70DNA repair protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD16 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0166

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 100 200 300 400 500 600 700 800 938

Detailed signature matches

  1. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  2. Domain IPR014001
    Helicase superfamily 1/2, ATP-binding domain
    1. PS51192 (HELICASE_A...)
    2. SM00487 (ultradead3)
  3. Domain IPR000330
    SNF2-related, N-terminal domain
    1. PF00176 (SNF2_N)
  4. Domain IPR001650
    Helicase, C-terminal
    1. PS51194 (HELICASE_CTER)
    2. SM00490 (helicmild6)
    3. PF00271 (Helicase_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.40.50...
  3. G3DSA:3.40.50...
  4. cd00046 (DEXDc)
  5. cd00079 (HELICc)
  6. mobidb-lite (disord...)

Residue annotation

  1. ATP binding site c...
  2. putative Mg++ bind...
  3. nucleotide binding...
  4. ATP-binding site c...

Protein sequence

>MCA_04186_1
MSELKKYNQKSYSNHRHNNHGRNDDEVVIMSQERASAPLSKPSSFNTEESISDLSSQFDNLLSIKNQENRKSSSKNGIEK
PWQRNKSKVFDTDGIALPQIHGNGHSNRPWSKDESSNFNTNSSLKSSISDHPQNQPVFGESWSPQKPQSETTLASRASTR
KIFSKQTGLTDSDNSAKKYSIPKGFMRPKPVTSRPPISTQRNCYSNPTSQIDTRPKIPILNQIHPSSNSTNSYSKPKNAL
TSHNDNDLSWLEPQEPSSAYWTKPTEKMTIKGPYSHHAIDSSFGQYNEGYTANPSANTWGLNAGMGVLGEKNVSGSSGVS
SSSTNVNLTGSNLTDSIKEIFDTFDKVEEEEEEEGEEQDGFIKREKEGSDSAERIKHEEKIERKKRSLKEGKVKGLNVQL
MDHQIQGVKFLKKREGSKIKYKGGLLCDDMGLGKTVQSIALILSNPYKKPSDDSKKTEKLYKGTLVVAPVSLIYQWKQEI
SDKAPGLSVHVYHGPSRDKDAARTFRHSDVVLTTFQIVGSESSDTESPLFLRKWWRIIVDEAHTIKNRKTKMTQGCYLLR
SDRRWCLTGTPIQNSLDELQSLIQFLRIGPYDDYQLWTSQISRPLNSGDADKAIARLHTVLRAIMLRRTKAVLKENKSNG
LKMKERRVNRVNIQFSKGERNVYDSFEKRAIAKLRELGMQDNKSYMTALVLLLRLRQVCDHSSLALKNLSAGDREALNGN
VSTKTGEDAEIDDDLADMLGGLSITKNKNNEYAHSLEATERQPSSKMIKLLEYLNQEKSRKTIVFSQFTSFLDVIGPFLK
KNGIKAVCYYGSMPPIKREEALNSLRNDSSVTVLLCSLKAGALGLNLTCASRVMIMDPWWNPMVNEQAIDRVHRIGQTRD
VDVYEFMVLESVEERIMALQEKKRQLHADVIEGAASGKKSTFSAAKLSLQDLMQLFKL

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005524 ATP binding

Cellular Component

None predicted.