Protein

MCA_04060_1

Length
218 amino acids

Description: GAG fragment of the Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Browser: contigC:1916219-1916876-

RNA-seq: read pairs 184, FPKM 10.4, percentile rank 26.5% (100% = highest expression)

Protein function

Annotation:GAG fragment of the Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Protein alignments

%idAln lengthE-value
UniRef50_A0A1S3TSL531.10%1648e-07uncharacterized protein LOC106758342 n=2 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TSL5_VIGRR

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0740

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 20 40 60 80 100 120 140 160 180 200 218

Detailed signature matches

  1. Domain IPR005162
    Retrotransposon gag domain
    1. PF03732 (Retrotrans...)

Protein sequence

>MCA_04060_1
MSSSIKNENPTTHTTEQYNSIIIECEKVPRIAKITAYKGQSDPSIINEWISKIESAMRTRFVDSRYWASAAFDLALFDGP
AEKWAKDGLNVVRANNGPIAPLIEWKTFCDAMRVFFVPEAVERALEAKVYRMQKSDTGSVIQYVADLRNCLYLLKPEVRR
KINVKQIFFHGLDSEMRDKLEVFYDNLSSDDLMQRALRMCHEEGRWKFRHFSTPTRLK

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.