Protein
MCA_04059_1
Length
859 amino acids
Description: POL fragment of the Retrotransposon Ty3/Gypsy Gag-Pol polyprotein
Browser: contigC:1906139-1908815-
RNA-seq: read pairs 256, FPKM 3.7, percentile rank 15.1% (100% = highest expression)
Protein function
| Annotation: | POL fragment of the Retrotransposon Ty3/Gypsy Gag-Pol polyprotein | ||
|---|---|---|---|
| EGGNOG: | 0PGPZ | to reverse transcriptase | |
| SGD closest match: | S000007347 | TY3B-G | Transposon Ty3-G Gag-Pol polyprotein |
| CGD closest match: | CAL0000191508 | ORF298 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A060T683_BLAAD | 43.53% | 850 | 0.0 | ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1 |
| UniRef50_A0A060T683 | 43.53% | 850 | 0.0 | ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD |
| YG31B_YEAST | 38.01% | 834 | 5e-169 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 |
| B5FVH8_YARLI | 35.18% | 847 | 2e-161 | YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1 |
| A0A167D9C8_9ASCO | 30.71% | 814 | 1e-102 | Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1 |
| A0A1D8PI28_CANAL | 25.20% | 631 | 2e-43 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ORF298 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1245
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
859
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
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putative NTP bindi...
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putative active si...
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putative nucleic a...
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active site cd09274
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RNA/DNA hybrid bin...
Protein sequence
>MCA_04059_1 MLNKVEDARVFSKLDLRSGYHQIRIRPQDIEKTAFSTSTGHWEFLVMPFGLTNAPATFQNFMNDIFRPYIDKFEEHVQHL KKVLDVLKENKLVANLKKCEFFKTELDFLGYKLDAKGIHITDEKVRAVKEFPIPKTVKECQRFLGMTNYYRKFVPNFSGI AAPLHDFTSEKTKWTETQTQAFETLKEKLIDAPILISPNSKHTYVLTTDASNKNIGATLEQYEGSRLLGVIAYFSRKLKP TEVNYAVRDLEFLAVVDALQHFRPLLLGRHFILRTDHFSLTQLQSQTKPPHGRIARWFDALADYDFTTQYIKGKQNVVAD ALSRQPSVNAIDTNDATNEEEEEELMSTPSDDIIRRVRDKLDSDDYFANVIRILNDENDPAHRTISSKYHLDDGLLYFKI TPVLDSNQYRLCIPDCSLRADLVAMAHTNGHYGPYRTFLRLAHFYYWPVMFPEVKRIVDHCPDCAYTQPNKTHGYLQPLQ IPQQRWDSISLDFVSGLPEVDGYDMILVVVDRLSKRARFLPTTKTLTGKDCAYLLHREIFKIHGFPLDIVSDRDVRFQEL FWKTMHLINGTKNLQSTSFHPETDGQTERSTMSSHAVQYGFNWPFHLATLEFSYNSTFQATIRASPFMADLGRVPRNPSF ITPPMSFTGKIEAEDFAIITQAILARTRDFIAEAQDKQSLYANKTRTALVLKENDEVLYIDSVNLFTGPYRVVKKIDDNV YEIDLPEYDRSRRNINVSRLKKFEPSEAFPRSPPLNLEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVLNL LSPAEQERIKRNANAMTRNLMTHPDLAKEQFTHNQHLWRNQALSFFNQEQINHMNRDDS
GO term prediction
Biological Process
GO:0015074 DNA integration
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.