Protein

MCA_04011_1

Length
91 amino acids

Browser: contigC:1769109-1769492+

RNA-seq: read pairs 238, FPKM 32.0, percentile rank 54.5% (100% = highest expression)

Protein function

KEGG:K20824NAA38 N-alpha-acetyltransferase 38, NatC auxiliary subunit

Protein alignments

%idAln lengthE-value
MIA_01812_151.43%705e-23MIA_01812_1
A0A0J9X4L3_GEOCN33.33%759e-15Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B OS=Geotrichum candidum GN=BN980_GECA02s06065g PE=4 SV=1
UniRef50_A0A0J9X4L333.33%752e-11Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4L3_GEOCN

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1828

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 70 80 91

Detailed signature matches

  1. Domain IPR010920
    LSM domain
    1. SSF50182 (Sm-like r...)
  2. Domain IPR001163
    LSM domain, eukaryotic/archaea-type
    1. PF01423 (LSM)
    2. SM00651 (Sm3)
  3. Domain IPR034110
    LSM domain containing 1
    1. cd06168 (LSMD1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.30.30...

Residue annotation

  1. Sm1 motif cd06168
  2. putative RNA bindi...
  3. Sm2 motif cd06168

Protein sequence

>MCA_04011_1
MSRERFPKTYETQILSSYMKSQLKVRVKDGRSYFGALICTDKDRNIIIENTTELQPIDNHTRNIGTIVIPGEQIESIHVL
EKPDYDSMEII

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

GO:0031417 NatC complex