Protein

MCA_03966_1

Length
1,513 amino acids

Description: protein with DDE superfamily endonuclease and DNA-binding HTH (CenpB-type) domains

Browser: contigC:1641726-1646268+

RNA-seq: read pairs 1357, FPKM 11.1, percentile rank 27.6% (100% = highest expression)

Protein function

Annotation:protein with DDE superfamily endonuclease and DNA-binding HTH (CenpB-type) domains
EGGNOG:0PQVYFGSG_14035conserved hypothetical protein
CGD closest match:CAL0000200636CIRT4BCirt4bp

Protein alignments

%idAln lengthE-value
MIA_01984_166.19%2107e-84MIA_01984_1
UniRef50_A0A0C9UKY029.80%1983e-14Unplaced genomic scaffold SPHSTscaffold_319, whole genome shotgun sequence (Fragment) n=3 Tax=Sphaerobolus stellatus SS14 TaxID=990650 RepID=A0A0C9UKY0_9HOMO
A0A1D8PSB5_CANAL27.33%1611e-08Cirt4bp OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CIRT4B PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2952
Predicted cleavage: 43

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 200 400 600 800 1000 1200 1400 1513

Detailed signature matches

  1. Domain IPR006600
    HTH CenpB-type DNA-binding domain
    1. PF03221 (HTH_Tnp_Tc5)
    2. PS51253 (HTH_CENPB)
  2. Domain IPR004875
    DDE superfamily endonuclease domain
    1. PF03184 (DDE_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:1.10.10.60
  3. G3DSA:1.10.11...
  4. mobidb-lite (disord...)

Protein sequence

>MCA_03966_1
MAINNTNPNSNSNSNTPSSSSASPGSFGDSNTNNNNNNSSRFSSQQPSDSSSIFNNETSSDTTAPPPQTRSQQAAQRKSQ
TSREFSKKARDESEREEKISRALSRVEEGLSYRQAAKEIGVSFGTVYGRFRGRKSRVKAQEARMKLSFLEEAVIEKMLLE
QIYIGKPYTQPYLVQTANNFLQAQGDNDPERVTRQWYRHFRRRHPSMDSKDFTGLHDPSSQKISYNAEAIQKWYSKFKDI
CTINRIAPENIYCIDEFAFCRGTAFSNNSEPHQHSSELSSIASSPASISSASSIASNEEISSSSSDMDASMQLSSESSSS
FSSTEESSSFSSDSESNGEFNRRLPNHLLNPHKSAASTTERIVTSDKISIAMPPSGTCTFLETICGDGTILPPYLIVQSH
LYDGARKILQQTPELVNWNLKSSASGWLNEDLILDWIQNHFDKYTAQKANGSVRLLILDTHALHFSINLLNYGIKNNIVF
LFTPPLPLPQLGPFNLSCLSVFKSDIYFVSKNRNKSKSSSSSKSKSKFKPSLEVFLNLLNDHRNKVFNKDSIQYLWQQSG
LIPFNPSIQSYRTNGNEDGTDGEESMKTLSFPVSMQDSSIIDLDSNGSERKIKLKPTLHASYLPVKDLDVDCPPSKSTKA
ASAIHSKSKGKKPKSSTDHILKNDRSKLNNVTYYSSSDSGTASKASASVSVNENHSSVASSNTAATSSSPTTSGSNNNTP
FSFANLQKGPQSQTTTSSGYSSNSGNSSNGNRVANSINIHNASQAVKPTSPDHNSSSSSSGSYQIIPSSSDSSAPNQIVF
AQGLSMPNPDDHVATLRLAAESIGRNKTLNDIQIDYNNQLKNTLLRIQDTISDLMSLQNLDISTDDNGTQSTGSLSPDSK
KMKQQKLLSSINEDLGAIIQGPDHEIAQLSAASRINSYLQNVFTMAHDSALQSGMIKRESQRRQQQQQQQQQQQQQHHHH
QGDHEMISIEDTRRQDHQETSSSSGSSIRSSNYKPTMLDTAAAIATTELRAAEFDDIIAGSSNYNESVNNKKSVEIASKE
LPFAENRRNNNNGPEPMNIKRDDESYTPSQMSESISTSGSNSASGSFEIDQEEEKPNYDMPSSFNNSKASMSVASSNASS
TPFNYDRPAKYNQTTLPPLPSVQSYYPVVIDSSSNKKNTSINSPPYQPVNNTVLPSPFGLFDTAPEQQTLPLITSSNPMP
HQQLPLRPIPIFDAYGHHTVDNLRFPPYVSRDHAVSTAAQNAYLNTNSNSLQEGSTKQEPETGRGYSPVEKHYSHQYHDN
YYSRDQKNLSTSNTRKNSNEFINPGYNYNTYSGYSHTRGTSIGSGPNASSRQTSGNNDKLNPHGSASTSAGNSGSSNANS
GSSNGNSNEGTPETSSSGSSYPLQQKPLIDPHNHHRGSISEVSCNSGSSRSTSIVQLENDDPITTNNKPVLNNSSSSGCG
TEGGGSSGYDSSANSSATASNINSPTGSHTLASIVSRVSLNSRGSNNNPGNENESKTWKTNQKRHHNYHRHHH

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.