Protein
MCA_03951_1
Length
647 amino acids
Gene name: PRP40
Description: Pre-mRNA-processing protein PRP40
Browser: contigC:1601301-1603245-
RNA-seq: read pairs 1663, FPKM 31.7, percentile rank 54.3% (100% = highest expression)
Protein function
| Annotation: | PRP40 | Pre-mRNA-processing protein PRP40 | |
|---|---|---|---|
| KEGG: | K12821 | PRPF40 | pre-mRNA-processing factor 40 |
| EGGNOG: | 0PGSH | FG07100.1 | formin binding protein |
| SGD closest match: | S000001495 | PRP40 | Pre-mRNA-processing protein PRP40 |
| CGD closest match: | CAL0000201504 | CAALFM_CR01050CA | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00073_1 | 52.67% | 581 | 0.0 | MIA_00073_1 |
| A0A0J9X8H6_GEOCN | 42.83% | 565 | 9e-146 | Similar to Saccharomyces cerevisiae YKL012W PRP40 U1 snRNP protein involved in splicing OS=Geotrichum candidum GN=BN980_GECA05s06247g PE=4 SV=1 |
| UniRef50_A0A0J9X8H6 | 42.83% | 565 | 2e-142 | Similar to Saccharomyces cerevisiae YKL012W PRP40 U1 snRNP protein involved in splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X8H6_GEOCN |
| A0A1E3PID6_9ASCO | 36.67% | 570 | 9e-110 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_43006 PE=4 SV=1 |
| A0A060THR5_BLAAD | 34.62% | 569 | 1e-102 | ARAD1D39886p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D39886g PE=4 SV=1 |
| Q6CAH0_YARLI | 29.42% | 571 | 5e-60 | YALI0D02827p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D02827g PE=4 SV=1 |
| A0A1E4TIW2_9ASCO | 27.53% | 574 | 2e-51 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_74082 PE=4 SV=1 |
| A0A161HLJ9_9ASCO | 33.00% | 303 | 2e-40 | Prp40p OS=Sugiyamaella lignohabitans GN=PRP40 PE=4 SV=1 |
| Q5A878_CANAL | 27.77% | 461 | 3e-38 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR01050CA PE=4 SV=1 |
| PRP40_YEAST | 26.01% | 469 | 4e-37 | Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0147
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
647
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
mobidb-lite (disord...)
Residue annotation
-
binding pocket cd0...
-
binding pocket cd0...
Protein sequence
>MCA_03951_1 MSVWQAHTGDDGRVYYFNTVTNESSWEKPDELLTPLEKALAKSKWKEYTAEGGAKYWYNEETEESVWDIPEEINTIIQNL SEEEKSAIASSADPIVASATINQHGVPFSAPLTETFKYTSESAIAPGKLPIIENQEEKLEAFKSMLKDHAVSKDQKWPSV MKLLIKDPRYWAISEPLERKRIFDQYSLSLKIELAEKKKKIREEQFSEMVRAFSNFPEIKYYTRWKTVKSKVLSDPIFQN FIEENIVKYKGDREKDGPRLVHAAFNQYVRGLRDTYEANKKREQQLAIKKLTNILETTLKVSANSSWTDTYNQLKESPKF NEDSLLSGMSKNDILAAYSDFIRIKDREFNAERQAQKKLQRRKERKIREAFVQVLEELHNKGYIKAGAKWTEVRPLLENK QEYIEICGQPGSTPLELFWDIVEEESRKLKLQREQVIDLITAKKFAVNNETSFESFKEFVESSLNALNSNNKEKSENAII SPSNLEAIFEDIKASEAKRKEMDRHADERRIRRLQDGLRAALHEIEPPIKPGDKWEDVEKLVQNTEEYIKLKTPELRREA FDKYMRRLQERIQEREQRSKEREQKDRDRLKEREEEERRRKTPLRGALPYGSSDWRNNGKPPAPPPPPPSSSGFYGYGPS SQPFLDY
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.