Protein

MCA_03919_1

Length
493 amino acids

Browser: contigC:1493855-1495337-

RNA-seq: read pairs 914, FPKM 22.9, percentile rank 45.0% (100% = highest expression)

Protein function

KEGG:K12829SF3B2 splicing factor 3B subunit 2
EGGNOG:0PGW8FG04320.1splicing factor 3b
SGD closest match:S000004853CUS1Cold sensitive U2 snRNA suppressor 1
CGD closest match:CAL0000196177CAALFM_CR10060WAU2 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MIA_01267_167.30%4220.0MIA_01267_1
A0A0J9YHM7_GEOCN60.53%4184e-160Similar to Saccharomyces cerevisiae YMR240C CUS1 Protein required for assembly of U2 snRNP into the spliceosome OS=Geotrichum candidum GN=BN980_GECA01s06764g PE=4 SV=1
UniRef50_A0A0J9YHM760.53%4189e-157Similar to Saccharomyces cerevisiae YMR240C CUS1 Protein required for assembly of U2 snRNP into the spliceosome n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A0J9YHM7_GEOCN
A0A1E3PDC7_9ASCO50.67%4465e-142DUF382-domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_4663 PE=4 SV=1
A0A060TGF2_BLAAD54.63%4439e-138ARAD1D23254p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D23254g PE=4 SV=1
A0A161HH56_9ASCO58.93%3362e-133Cus1p OS=Sugiyamaella lignohabitans GN=CUS1 PE=4 SV=1
Q6CA63_YARLI56.55%3132e-112YALI0D05577p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D05577g PE=4 SV=2
A0A1E4TJG9_9ASCO44.28%3324e-89Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_76151 PE=4 SV=1
A0A1D8PU52_CANAL47.64%2121e-58U2 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR10060WA PE=4 SV=1
CUS1_YEAST42.55%2356e-50Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0132

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 300 350 400 450 493

Detailed signature matches

  1. Domain IPR011989
    Armadillo-like helical
    1. G3DSA:1.25.10.10
  2. Domain IPR007180
    Domain of unknown function DUF382
    1. PF04037 (DUF382)
  3. Domain IPR006568
    PSP, proline-rich
    1. PF04046 (PSP)
    2. SM00581 (testneu)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_03919_1
MSATIDTPQIQPENNAKVSKKEPAKKLSKNQWRRKKLKEKKQTKKNDVESADEPKIKVENHDVGDGSQYEMRNKMNIPTN
SGSKMFESDVDVALNDPQFAVYKQILDKFHTESTETTSAKADDIFYSDDENNVGSDDNEETESQPISKKKRKNKMQLAEL
KAIAPRPELIDWFDADAPDPLLVVEIKSHRGVVPVPEHWQLKREYLSSKRGIKKAPFELPGYIKDTGIMEMRNVTKEDDQ
TLKQMVRERVQPKMGKLDIDYEKLYNAFFKFQTKPRLYKFGELYYEGKETEMNVEHFRPGKLSPRLIEALNIPPNAPPPW
LVNMQRYGPPPSYPGLRIPGLNAPIPPGAQWGFQPGGYGRAPLDENGQPLYGDVYATTNDNEKSSLGVPIERNKWGQLIL
EESEEEEEEDEDEDDDKMELEDDEGAGYVDEETAINKDKLKASDETPEIELRKTIPQSSKPEKFEEPRDLFKVLKEKTSS
NTGFMGHQKTYEF

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

GO:0005634 nucleus