Protein

MCA_03911_1

Length
266 amino acids

Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Browser: contigC:1477615-1478416+

RNA-seq: read pairs 75, FPKM 3.5, percentile rank 14.7% (100% = highest expression)

Protein function

Annotation:Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Protein alignments

%idAln lengthE-value

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.5409

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 266

Detailed signature matches

  1. Domain IPR005162
    Retrotransposon gag domain
    1. PF03732 (Retrotrans...)

Protein sequence

>MCA_03911_1
MRTRFVDSRYWASAAFDLALFDGPAEKWAKDGLNVVRANNGPIAPLIEWKTFCDAMRVFFVPEAVERALEAKVYRMQKSD
TGSVIQYVADLRNCLYLLKPEVRRKINVKQIFFHGLDSEMRDKLEVFYDNLSSDDLMQRALRMCHEEGRWKFRHFFDPNQ
TEMTLVDPLAIKAVQASPEPTVGVDNINYNRNNSKTVTTKVLTMGRRTITKEMPLAFPPTLFVTPAEVRVTRLESAQTRR
RMLLRTPVPVQKTPKTNIKGRRWFHK

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.