Protein

MCA_03746_1

Length
605 amino acids

Gene name: RLI1

Description: Translation initiation factor RLI1

Browser: contigC:959556-961527-

RNA-seq: read pairs 8305, FPKM 169.3, percentile rank 86.2% (100% = highest expression)

Protein function

Annotation:RLI1Translation initiation factor RLI1
KEGG:K06174ABCE1 ATP-binding cassette, sub-family E, member 1
EGGNOG:0PHY8RLI1ATP-binding cassette sub-family E member 1
SGD closest match:S000002498RLI1Translation initiation factor RLI1
CGD closest match:CAL0000178640RLI1Fe-S cluster-binding ribosome biosynthesis protein

Protein alignments

%idAln lengthE-value
MIA_03344_187.69%6010.0MIA_03344_1
A0A0J9X830_GEOCN86.09%6040.0Similar to Saccharomyces cerevisiae YDR091C RLI1 Essential iron-sulfur protein required for ribosome biogenesis and translation initiation and termination OS=Geotrichum candidum GN=BN980_GECA05s00186g PE=4 SV=1
A0A060TGS9_BLAAD82.18%6060.0ARAD1D33176p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D33176g PE=4 SV=1
Q6CGN0_YARLI81.03%6010.0YALI0A17941p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A17941g PE=4 SV=1
Q5AI20_CANAL78.17%6000.0Fe-S cluster-binding ribosome biosynthesis protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RLI1 PE=4 SV=1
RLI1_YEAST79.01%6050.0Translation initiation factor RLI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RLI1 PE=1 SV=1
UniRef50_Q0319579.01%6050.0Translation initiation factor RLI1 n=173 Tax=Eukaryota TaxID=2759 RepID=RLI1_YEAST
A0A161HHR6_9ASCO24.46%3279e-11New1p OS=Sugiyamaella lignohabitans GN=NEW1 PE=4 SV=1
A0A1E3PGM2_9ASCO27.60%2217e-10p-loop containing nucleoside triphosphate hydrolase protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_26478 PE=4 SV=1
A0A1E4TKN3_9ASCO27.00%3002e-08Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_84868 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1864

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 100 200 300 400 500 605

Detailed signature matches

  1. Family IPR013283
    RLI1
    1. PR01868 (ABCEFAMILY)
  2. Domain IPR007209
    RNase L inhibitor RLI, possible metal-binding domain
    1. PF04068 (RLI)
  3. Domain IPR017896
    4Fe-4S ferredoxin-type, iron-sulphur binding domain
    1. PF00037 (Fer4)
    2. PS51379 (4FE4S_FER_2)
  4. Domain IPR003439
    ABC transporter-like
    1. PF00005 (ABC_tran)
    2. PS50893 (ABC_TRANSP...)
  5. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  6. Domain IPR003593
    AAA+ ATPase domain
    1. SM00382 (AAA_5)
  7. Domain IPR034348
    RLI, domain 1
    1. cd03236 (ABC_RNaseL...)
  8. SITE IPR017900
    4Fe-4S ferredoxin, iron-sulphur binding, conserved site
    1. PS00198 (4FE4S_FER_1)
  9. SITE IPR017871
    ABC transporter, conserved site
    1. PS00211 (ABC_TRANSP...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.30.70.20
  2. G3DSA:3.40.50...
  3. SSF54862 (4Fe-4S fe...)

Residue annotation

  1. Walker A/P-loop cd...
  2. ATP binding site c...
  3. Q-loop/lid cd03236
  4. ABC transporter si...
  5. Walker B cd03236
  6. D-loop cd03236
  7. H-loop/switch regi...

Protein sequence

>MCA_03746_1
MSDLTRIAIVSTDKCKPKKCRQECKKACPVVRTGKLCIEVTSASKIAFISENLCIGCGICVKKCPFGAIQIINLPTNLDS
QVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALRILSNKEKPNLGRFDDPPTWNEILVYFRGSELQNYFTKLLE
DNLKAIIKPQYVDNIPKGVKGPVKQVKQLLDLKNQRPNSFDEICKILELKGVMGRELAQLSGGELQRFAIGLSCVQKADV
YMFDEPSSYLDVKQRLNAARVIRDLLGPSVYVIVVEHDLSVLDYLSDFVCILYGVPSVYGVVTLPYSVREGINIFLDGHI
PTENMRFRTESLQFRLTDASDAIPIDQARSFTYPSMVKTMGDFQLNVESGQFTDSEIIVMMGENGTGKTTFCRLLAGLLT
PDSGKKVPELNISFKPQTIAPKFPGTVRQLFFKKIKASFLHPQFQTDVIKPLRIDDIIDQEVLHLSGGELQRVAIVLALG
KQADIYLIDEPSAYLDSEQRIICAKVIRRFILHAKKTAFIVEHDFIMATYLADRVIVFDGQPSVKSFANPPESLLSGCNK
FLKNLNITFRRDPVSFRPRINKLDSQMDREQKNSGNYFFLENNDA

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005524 ATP binding
GO:0016887 ATPase activity

Cellular Component

None predicted.