Protein
MCA_03600_1
Length
1,498 amino acids
Browser: contigC:476176-480673-
RNA-seq: read pairs 687, FPKM 5.7, percentile rank 18.6% (100% = highest expression)
Protein function
| KEGG: | K10838 | XPC | xeroderma pigmentosum group C-complementing protein |
|---|---|---|---|
| EGGNOG: | 0PHV4 | PGUG_01339 | DNA repair protein |
| SGD closest match: | S000000964 | RAD4 | DNA repair protein RAD4 |
| CGD closest match: | CAL0000186545 | orf19.6722 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05981_1 | 45.00% | 680 | 1e-172 | MIA_05981_1 |
| A0A0J9X753_GEOCN | 41.69% | 674 | 3e-153 | Similar to Saccharomyces cerevisiae YER162C RAD4 Protein that recognizes and binds damaged DNA (With Rad23p) during nucleotide excision repair OS=Geotrichum candidum GN=BN980_GECA04s02815g PE=4 SV=1 |
| UniRef50_A0A0J9X753 | 41.69% | 674 | 6e-150 | Similar to Saccharomyces cerevisiae YER162C RAD4 Protein that recognizes and binds damaged DNA (With Rad23p) during nucleotide excision repair n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X753_GEOCN |
| A0A167D1R9_9ASCO | 37.70% | 671 | 2e-135 | Rad4p OS=Sugiyamaella lignohabitans GN=RAD4 PE=4 SV=1 |
| A0A060TEN2_BLAAD | 35.03% | 668 | 7e-109 | ARAD1D09130p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D09130g PE=4 SV=1 |
| A0A1E3PSU8_9ASCO | 34.10% | 695 | 8e-101 | Rad4-domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_13964 PE=4 SV=1 |
| Q5ADX0_CANAL | 34.18% | 673 | 6e-95 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6722 PE=4 SV=1 |
| Q6C9S4_YARLI | 32.49% | 674 | 1e-84 | YALI0D08756p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D08756g PE=4 SV=1 |
| A0A1E4TLR2_9ASCO | 31.26% | 675 | 6e-79 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_16193 PE=4 SV=1 |
| RAD4_YEAST | 28.68% | 673 | 1e-74 | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1912
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
200
400
600
800
1000
1200
1498
Detailed signature matches
-
-
PF03835 (Rad4)
-
no IPR
Unintegrated signatures
-
-
SSF54001 (Cysteine ...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_03600_1 MARDDSKLVDRKDKRPSRSLSSSPPETKPSFKPHPIDKDGLNMPSPSKSHSQSEKSRNTQRQTTPQSKPSSLSSSTSSPS SSSSSSSRRPVKIINPTDPVNQRLRPTAGYTSVYSNNTYHGRPTKNATVLDKLRKKYQGIDSRNAKQISKLINTKKDSIN NNNNNNSQREEEEDNSSSSNNRKTNSSNKEKSKSRYSVPLEYMSLLSETLNHKKSSSLDNSKNLHTDQPSSKLNDSKKII QHDRKLPLSSTSRKRGDDEIKDNHTSIPIKSEEPESSSRSMAININDGSDIDVSNSESDYDEDDDDIEWEDITKSSEPTN QSDEDSEDEYKLSNDDDDDDDDDDEDGYENRKQKNIPHIDVPSLSTLDTNPETTDSPASSNGGVVISIENPEPKPRPGQF DKNGKNKKKTVKRRKDGSIITRISKAERQERRLIHKLHLACLMMHVSIRNQWCNNPDLLQRYSTILPKSILKELVPTQQD LQKYEKYSKESRELILSRNFLDGLKHAMNHWNYRVFETATDRGIKLVEWCDIYNRDRIVESKVNKEKFLKILIKRRRGNR DVSAQGFCTLLRSIGLSARLICSVQPLDFTSNYPITNNPFADDKNKQDLTEQELEEVETQTSSGSLNIVSSYPVYWVEVW NPYISKWISVDPCCLKYIEVANVHTRGKSKFEPPISESSTNCMRYVLAFEPNGAVKDVTRRYAFYYNAKTLRKRIDGKPN EYPEDVIWYQDLLKFITNKNLMSSMRMPSNPALIEDAETIAARDILEKQELELRNQKEPLPSRIADFKNHPVYVLERHLH ANEILEPMIPCGKLATTSASKSRKSSAATNPGVQNVYRREHVKVVRSARYWYQQGRVLKVGATAKKFVVKKPKALPDPAP KISRKRKVPSDEDDEEEEYEEEEETNEPSIMDLDDDEGDVRVGLYSYDQTELFVPPPVDSDGTIPKNIYGNIDVFVPSMV PKGAVLLPMKDIEEAAKILRIPYARAIVGFDFGGQGSSSSSSSYSALNYGSSRSKGSGTAQPRTGGIVVAEQFKDAVLLT YEHLQMEKEEEKHQMRLVHSLVKWKKFLLALRIKAQLNRDHGVIDKNGERVFKPLDEQKEQEAATEQEELIDENEDNSWI GYSSEPDGYYNEQQGQQAGVYIHDYDDEFGGGGGFLIGDAPDSGNGYNNYGNDYNNDYGGGGGFLLDDDNNNNDQGGFDE TQADDDNQSYNQVEPKTEQKISVNNLNTKEKNQASSEIQSSKEIQQQQPLPAVKANHIETTSINNSTISRHISSSNNTQT SLTFQNNMFSSTINSSSSSSSFIQTQLAEISDGDDEYDIEIGASSSSDDDDNSHIIIDFEEEIYRKKDEHDQELYLEGLK KQQAIKQQQEEEERKKEEEEEKKKEEEEENENEKINEKEIEQKNNNDEKKDNNQILLSVKNEKQYQNENDISKSPKVTQN KDDLASVSSSSPSSPFSPPSPDESQNSEGDFFPESMSESELLADFDEEEESYENDDDE
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003677 DNA binding
Cellular Component
None predicted.