Protein

MCA_03510_1

Length
313 amino acids

Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Browser: contigC:170186-171128-

RNA-seq: read pairs 0, FPKM 0.0, percentile rank 0.8% (100% = highest expression)

Protein function

Annotation:Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Protein alignments

%idAln lengthE-value
UniRef50_A5E73726.37%1823e-07Uncharacterized protein n=2 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5E737_LODEL
A0A060TC47_BLAAD24.86%1812e-06ARAD1B13904p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13904g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0292

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 313

Detailed signature matches

  1. Domain IPR001878
    Zinc finger, CCHC-type
    1. PF00098 (zf-CCHC)
    2. SM00343 (c2hcfinal6)
    3. G3DSA:4.10.60.10
    4. SSF57756 (Retroviru...)
    5. PS50158 (ZF_CCHC)
  2. Domain IPR005162
    Retrotransposon gag domain
    1. PF03732 (Retrotrans...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_03510_1
MEDTDVRHQLYTQGQQLHELLSRLQANEQTLSDLRIAGPHNRQAVHEVAKLARSSNFKPYDGKPNPFALNEWSDTVVQQC
IFWNLDRNLWTSTAAATGLLKGRANRWAHEYLKNNFTDPKDCSWETFKANMYRKFVTIVIDLQVHQAFDNLKQTDMVRTY
CQSFRDYVALLYPDRGDRDDYINKKFIRGLKDDVRKWVYNMSEGKTLDELITSAEFNSNEMLIGYPDHSTSVFPSEGDPM
DIDKLDFGSNPSEFVYNVTCNKCGGIGHYASVCPSQRKNENTPKGGNRRRRGKEDKSRKNYSSESSKNDEDQY

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.