Protein
MCA_03507_1
Length
295 amino acids
Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein
Browser: contigC:158253-159179-
RNA-seq: read pairs 73, FPKM 3.0, percentile rank 13.8% (100% = highest expression)
Protein function
| Annotation: | Retrotransposon Ty3/Gypsy Gag-Pol polyprotein | ||
|---|---|---|---|
| EGGNOG: | 0PGPZ | to reverse transcriptase | |
| SGD closest match: | S000007347 | TY3B-G | Transposon Ty3-G Gag-Pol polyprotein |
| CGD closest match: | CAL0000175689 | POL93 | Pol93p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A060T683_BLAAD | 35.29% | 255 | 6e-45 | ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1 |
| UniRef50_A0A060T683 | 35.29% | 255 | 1e-41 | ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD |
| YG31B_YEAST | 32.77% | 238 | 4e-31 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 |
| B5FVH8_YARLI | 31.45% | 248 | 8e-30 | YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1 |
| A0A1D8PC70_CANAL | 26.61% | 248 | 5e-21 | Pol93p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POL93 PE=4 SV=1 |
| A0A167CTX1_9ASCO | 31.28% | 195 | 6e-17 | Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_338 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0227
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
295
Detailed signature matches
-
-
SSF53098 (Ribonucle...)
-
-
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_03507_1 MHLINGTKNLQSTSFHPETDGQTERVNRVLRALMSSHAVQYGFNWPFHLATLEFSYNSTFQATIRASPFMADLGRVPRNP SFITPPMSFTGKIEAEDFAIITQAILARTRDFIAEAQDKQSLYANKTRTALVLKENDEVLYIDSVNLFTGPYRVVKKIDD NVYEIDLPEYDRSRRNINVSRLKKFEPSEAFPRSPPLNLEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVL NLLSPAEQERIKRNANAMTRNLMTHPDLAKEQFTHNQHLWRNQALSFLIKNRLTT
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.