Protein
MCA_03390_1
Length
2,189 amino acids
Gene name: SEN1C
Description: Helicase SEN1
Browser: contigB:4293557-4300318+
RNA-seq: read pairs 604, FPKM 3.4, percentile rank 14.5% (100% = highest expression)
Protein function
| Annotation: | SEN1C | Helicase SEN1 | |
|---|---|---|---|
| KEGG: | K10706 | SETX | senataxin [EC:3.6.4.-] |
| EGGNOG: | 0PFUU | SEN1 | tRNA-splicing endonuclease |
| SGD closest match: | S000004422 | SEN1 | Helicase SEN1 |
| CGD closest match: | CAL0000183795 | SEN1 | Putative DNA/RNA helicase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03901_1 | 53.62% | 1865 | 0.0 | MIA_03901_1 |
| A0A0J9X8S5_GEOCN | 46.82% | 1839 | 0.0 | Similar to Saccharomyces cerevisiae YLR430W SEN1 Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs OS=Geotrichum candidum GN=BN980_GECA06s00615g PE=4 SV=1 |
| UniRef50_A0A0J9X8S5 | 46.82% | 1839 | 0.0 | Similar to Saccharomyces cerevisiae YLR430W SEN1 Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X8S5_GEOCN |
| A0A1E3PFB1_9ASCO | 41.39% | 1319 | 0.0 | p-loop containing nucleoside triphosphate hydrolase protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_7636 PE=4 SV=1 |
| A0A060TAU8_BLAAD | 49.25% | 869 | 0.0 | ARAD1D26598p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D26598g PE=4 SV=1 |
| Q5ANG6_CANAL | 31.96% | 1940 | 0.0 | Putative DNA/RNA helicase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEN1 PE=4 SV=1 |
| W0TYQ4_YARLI | 46.72% | 762 | 0.0 | YALI0A19404p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19404g PE=4 SV=1 |
| SEN1_YEAST | 44.27% | 820 | 0.0 | Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2 |
| A0A1E4THA5_9ASCO | 44.81% | 770 | 0.0 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_12256 PE=4 SV=1 |
| A0A167CSC4_9ASCO | 56.36% | 495 | 1e-161 | Putative DNA/RNA helicase SEN1 OS=Sugiyamaella lignohabitans GN=SEN1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0060
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
200
400
600
800
1000
1200
1400
1600
1800
2000
2189
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
PF13086 (AAA_11)
-
PF13087 (AAA_12)
-
mobidb-lite (disord...)
Protein sequence
>MCA_03390_1 MSNSNPVVQTDHHDTDSSPLKNLDIIYNELKEMYKSPSGLEEKMVNESVIFLLGRPPEHWFCSNEKLTFVARTSLLSFSY FQPEPVIIAYREKLKKVLYDCHNCARGYHNQLFKVLDLILNDLQYEESLANEYMDFVASWNVARLSAVLESTKARLKQLA HPKASSIVPDMVTLFECLCVPNLLLNPEYHNLFDLFKSVFFMVQRPEHPVIRSSDLTPGYISFLFGNDPELYIFTKISIS KMPANNKFVLFKKEDMDDVVLHAFDQVVSNIQSGSHSQYELRLFWYNFNHILQLLDASAIKDSLASREQDIIRFLVNSIL LSPSQSLPAALRAFSSVIQKLGTATWEVLYPTKPLPIVNSIIKNEYLQKQEGWLNLPNDNEQNQLLGYPQQSTDVLDWVI PLLKSCDQTDMIKAGTQIIPFLFKNAKLLADKVEGEALYRTTFDTIITCIKIEPRTRVPFVFQVERLIKQDIKILVYQYG PDIIKACDTFKNLDIQVTRKAQQIIYYSILVDVIAGEPESLSLKKAAAIEGDGENPPPNVKSLWEVLNDVFPLDSEIAIQ VLRAIKYVGFIVRPPPKKPNEVPVFPKNKLSEKAVDEAVRSMQTISLFDPKLLDPIISDYESFLSLILSMYSAHSKITES AVDVLCQAFDADNRLSALTRAMDSNLKSTLKVLTESYAIVQDVEIFSPYPKLIKVSQDIIQCLFGATSGVAAKRKHELTP GKENELLTYWVRSWVFLEVAFKKTPKWSYVFKSDFMLEFLRDLLDFSKDLVDYFFLVESLIPPLEKNSDGTKPESISSIL LAPVVKCIVQMCEMLRLKDESLILTCFNIIMSVLDLMKNFGVAPSRTLVDIFIGLASSAKAFQNVLTNDQKVRLLVASGN FDLETAEGILGRDTSASEDDSSSSKEPQSTSTSTTTSIQKPRGQTAINDFARPGSQTLPKQVQDAFSKSVNVIGSAPHKQ SMLEAVRQDLKLQTARPPIKPLPIPKEIHPPRPPGFNSSSRFGRQAAVNAKKRDTSKSAGNSSSEDESSDDDKEDGLFTV TKTVTKLRNIEKQRLNASGVGISYARRARDLIAEKERRQRDMRARLQVDLDPLYKHILSWDYHSNSPFPQKLNKNAAPND AKNYRPVPAQFKSVDEYVKIFEPLLMLECWQGLVKMKEEGNETPFKTIIGSKTLVGNGIYEIRASISSKIAQDIRLGDSD LLLLSYFENSSIDSLPQQPSKSAPYCLAKVKEVKPNGPENFEITLRVDDPPLSMHNHLTTSQVIDAIRVGSLVTIEREYS ALKALQYYDLKDKILAGEPAKPIEIPQQDLQQTIKSFNVNESQAKAIIESKSNQGFSLIQGPPGTGKTKTILGIVGSFLT ANDTQGSAPSPVDKTPQSDGSNIRRIMICAPSNAAVDELVLRLKDGIPGYDGKIFKPSVVRVGRTDAINSNVKECTLEEL VDKKLETITKKENEIYDGKFREIQAKQKAERDRLRALLDQESDPEKASKIRSQYIEMVKKIKITGHSLDLQREQIHVNIR QRDIERRKIQASILQNANVVCATLSGSSHNVLVSLQMFFETVVIDEAAQSIELSALIPLKYGCKQCIMVGDPNQLPPTVL SQEAALLKYEQSLFVRMFNRYPDRIHMLDIQFRMHPEISVFPSKEFYRDKLKDGPNNHLNTSRNWHANTIFGPYRFFDVA GQQEQSARSKSLINRNEASVILELYQALEYIYGHTFLNGKIGIISPYKQQVTLLKNVFQNIYGNTILKEIDFNTIDGFQG QEKDIIIISCVRAQKDSRGVGFLGDTRRLNVAITRAKSSLWILGNEKSLASNPVWKRLIEDAKKRGLFSKMATGTMSNPN YLKRLKSDSQKTVLTQPSQNSVKAIENNSSTIKSTEGSEISKTSNSNASKSDNPDSKRNGYSSDKTGSFKTNLKKTSSSS SISSDEYYHSTSSSPGKANHQDNPSPRTQDNNSSNSNNTSNSRDRSASENQSNPPAKRKSDSEYVPTYNKRRETDENYDS SRYVPSRSNSHYNNQPHSRRPKNYRPNDYRPSNNNYQDTSSYYDSYRPQNSSSSSYGNGPAESNRNAPNPTNSSSTSSQR NYSNSMDPRIYRNQSNSNRANDVKNSNSPSTSNNSNINSNNNNDTSSSITNNRNTPQLAPIRPPENNNNSSGSSKSPTSP VKPADPRKKIIHRKKSTNIFVPRKPGPRR
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.