MCA_03305_1

Gene name: HSM3

Description: DNA mismatch repair protein HSM3

Browser: contigB:3978886-3980542-

RNA-seq: read pairs 1262, FPKM 28.2, percentile rank 50.9% (100% = highest expression)

Protein function

Annotation:		HSM3	DNA mismatch repair protein HSM3
EGGNOG:	0PINH	HSM3	Involved in DNA mismatch repair in slow-growing cells. Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC)
SGD closest match:	S000000476	HSM3	DNA mismatch repair protein HSM3

Protein alignments

	%id	Aln length	E-value
MIA_06163_1	34.55%	550	4e-90	MIA_06163_1
A0A0J9X9H1_GEOCN	31.49%	543	2e-64	Similar to Saccharomyces cerevisiae YBR272C HSM3 Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP) OS=Geotrichum candidum GN=BN980_GECA06s01440g PE=4 SV=1
UniRef50_A0A0J9X9H1	31.49%	543	4e-61	Similar to Saccharomyces cerevisiae YBR272C HSM3 Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X9H1_GEOCN
A0A167CAZ7_9ASCO	28.04%	560	1e-38	Hsm3p OS=Sugiyamaella lignohabitans GN=HSM3 PE=4 SV=1
A0A060TA46_BLAAD	23.44%	529	1e-26	ARAD1D20504p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D20504g PE=4 SV=1
A0A1E3PFK3_9ASCO	29.45%	163	2e-13	Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_80222 PE=4 SV=1
HSM3_YEAST	21.53%	548	2e-13	DNA mismatch repair protein HSM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSM3 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0973

Protein family membership

None predicted.

Domains and repeats

Protein sequence

>MCA_03305_1
MTDPIFQKAHQNLEQVLSTGGKTYIDEALINQVTDRLKYDSALLRPGSDTEMAIISRLLPPSIQVLKLSATTHIEDLESI
VELIEALLSKKQFEEVTQLISLADIIEGIQSVNVPSLQKVAAKQASKASPPDILASTGLIEALLQQLSNAKNKHPSAIES
CLIQLATSGELIIRRIFTGDCLQILKDMHNSNDAVLIGRLLELVKGVILSPEMSKYIYDEINIRKEIIGLLRYTNPDIWN
PSNHEKWDVFLIGIIVQTLRDIFGSEECPTKLLISTAKSLESAKEQSLDTDLGLFSELDKVANLFSMINIHSDIRYFVAS
DILSLFKALTTIEGNNSPFAKKNDKHHRREDDSTSEERYTLKIQIFKKLDEKYQLIKGACDSNDAPDLDTVASDTIQVLT
HIGPKYLLDEHKDIIRKVELNSKNIPVFCNLVHDEECFKYLELTQTQIVNGLVNYFDQILLVSHIIQTPYGLNLVLKSWP
QVMNQIIVAPRNEVREPNSFEIRREVLKNLTDLEPYALGTWYGSVREAYRETIFGPGYYKAPSVAVANQSE

GO term prediction