MCA_03260_1

Browser: contigB:3851270-3851972+

RNA-seq: read pairs 720, FPKM 38.0, percentile rank 59.2% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.7436
Predicted cleavage: 46

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   228 - 233

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   23 - 206

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. PS51257 (PROKAR_LIP...)
   1 - 19

   PROSITE profiles
   PS51257 (PROKAR_LIPOPROTEIN)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 22

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   19 - 22

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   8 - 18

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 7

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-noTM
   1 - 22

   SignalP euk
   SignalP-noTM (SignalP-noTM)
9. TMhelix
   7 - 26

   TMHMM
   TMhelix (TMhelix)
10. TRANSMEMBRANE (Tran...)
    207 - 227

    PHOBIUS
    TRANSMEMBRANE (Transmembrane region)
11. mobidb-lite (disord...)
    182 - 201

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    81 - 121

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_03260_1
MNFVKSNIYLLLLVSLFACAFARPASHNKEFKKFARQLTLYGRSASPEADITVTEYKYEDVTSSGPEMTVTVTLLDEEST
TTSSSVAKDTTTSISTSTSTSTFISTSTSTPTSTSASISKSTSISTSTSTSISASTSTSATTKIQVESSSTETVASEITS
FSSKVASSSIPDASAHITDLQVPTPLGKANPNTGIASKESENSATSLSQSMLACTSFLSIILASYVFNELLGF

GO term prediction