Protein
MCA_03061_1
Length
371 amino acids
Gene name: CWC21
Description: Pre-mRNA-splicing factor CWC21
Browser: contigB:3228937-3230053-
RNA-seq: read pairs 1449, FPKM 48.1, percentile rank 64.6% (100% = highest expression)
Protein function
| Annotation: | CWC21 | Pre-mRNA-splicing factor CWC21 | |
|---|---|---|---|
| EGGNOG: | 0PQ6J | CWC21 | Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate (By similarity) |
| CGD closest match: | CAL0000190345 | CWC21 | Pre-mRNA-splicing factor CWC21 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_06097_1 | 39.86% | 286 | 3e-42 | MIA_06097_1 |
| A0A0J9X5A6_GEOCN | 47.41% | 135 | 6e-33 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA03s00285g PE=4 SV=1 |
| UniRef50_A0A0J9X5A6 | 47.41% | 135 | 1e-29 | Uncharacterized protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X5A6_GEOCN |
| A0A167CGF2_9ASCO | 43.08% | 130 | 5e-24 | Pre-mRNA-splicing factor CWC21 OS=Sugiyamaella lignohabitans GN=AWJ20_4475 PE=4 SV=1 |
| A0A060TAA7_BLAAD | 44.36% | 133 | 9e-23 | ARAD1B05896p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B05896g PE=4 SV=1 |
| A0A1E3PSB1_9ASCO | 30.64% | 235 | 5e-19 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_68499 PE=4 SV=1 |
| CWC21_YARLI | 39.33% | 89 | 2e-15 | Pre-mRNA-splicing factor CWC21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC21 PE=3 SV=1 |
| CWC21_CANAL | 33.58% | 137 | 5e-12 | Pre-mRNA-splicing factor CWC21 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC21 PE=3 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.5820
Predicted cleavage: 36
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
371
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_03061_1 MSYNGIGLPTPRGTGTSGYVQKNTSSLNSTAWSRKGVYAKRQELQKLNENRQSKFLRHNIATRQVDQGIIDHEKKRKIEI ECVKLRAQLEDDREEQIENGEDEDNLLTDEQIEQQVAQLRERLKKEEDQKNERSRRYSDDKYGKLSSRFKQSDSKKDRRD EDYSDGKSAHSMALEKARDNDKFKKALEWSEETKRQSKPYRRRERSLSPIRSSEEHKEHDRKSSKYEHRYSSNRNYNSKS RNEMEGEDDYYHRRKNRDDRGRYYSTGIGQAIDYDGYKSSSKETGLVDRDSPKPTISKEHEEDGKKRILSKPLAPYREIK TTVPDKPVKAETSKSTDSTNANLPEKPSSNSQSDSDSKDFKSDKVKEESKE
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.