MCA_03033_1

Browser: contigB:3152230-3154141+

RNA-seq: read pairs 28, FPKM 0.5, percentile rank 7.1% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.8886
Predicted cleavage: 67

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. NON_CYTOPLASM... (N...)
   22 - 636

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
2. SIGNAL_PEPTIDE (Sig...)
   1 - 21

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
3. SIGNAL_PEPTID... (S...)
   17 - 21

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
4. SIGNAL_PEPTID... (S...)
   5 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
5. SIGNAL_PEPTID... (S...)
   1 - 4

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
6. SignalP-noTM
   1 - 21

   SignalP euk
   SignalP-noTM (SignalP-noTM)
7. TMhelix
   295 - 317

   TMHMM
   TMhelix (TMhelix)

   337 - 359

   TMHMM
   TMhelix (TMhelix)
8. mobidb-lite (disord...)
   499 - 530

   MobiDB Lite
   mobidb-lite (disorder_prediction)

Protein sequence

>MCA_03033_1
MNFKLIQVLLATFHLCELVSGKPISSQLFLQPQISKAFTNVANIWQTALRLGGIGMRELSNDEYFSTLQKQADEHDYDDE
QTNFLKNDLTTTIGFPLISDHDWIKDDYNFLKDHETDFLPSIKSGLSNDDKFVSKSFERAYEMQRKKVNDQVKRALELKL
QLDKRVVGMYPDIVYGRRDSIINKEKASFEFRVDYSDSIYEQGEFQSWKQVEDMLNFKEFSKMVNNKNDDDEQVSALFDE
TYQYDPPTAFMKILTCGPVSGLKYGFKAGEYTGKGINSLVRYAGKEGLIEPIAVMSAGGLLGAASGAAIAVPVSLVVGTI
KSAFICMDSDLGNGTAFFVGLAITTSVTLGPVAGGFAGAVAGFRMCTPENLPKDYYNVLVHRIQQRSKAKFKHILSRAFG
TREDKKTNNKKENREIGNRFATILDKVASLPFDFPYLYATFEESVEGRDESLCTGDILQIPLTKDEHVEREIKVFSSLKD
KELGFESIEVAIPITKSVYDDDDDDNNNNNNNNNNNNNNNNNNNNNNNNVAITSENVETLYWQYTWKRLSTGEEESLILK
YDYVTTSATSVESPSLLSLSLSNDSDIIPLHMVGIDAMRVNFDENEIVDISKLNLDYECLEKKHTFKFDWNHQVIS

GO term prediction