Protein
MCA_02989_1
Length
462 amino acids
Browser: contigB:3017141-3018730-
RNA-seq: read pairs 647, FPKM 17.3, percentile rank 37.4% (100% = highest expression)
Protein function
| KEGG: | K12857 | SNRNP40 | Prp8 binding protein |
|---|---|---|---|
| EGGNOG: | 0PJ2T | FG02648.1 | WD repeat-containing protein |
| SGD closest match: | S000000668 | RSA4 | Ribosome assembly protein 4 |
| CGD closest match: | CAL0000180486 | orf19.3778 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02535_1 | 50.64% | 470 | 4e-141 | MIA_02535_1 |
| A0A0J9X9R8_GEOCN | 43.39% | 454 | 7e-110 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA07s00263g PE=4 SV=1 |
| UniRef50_A0A0J9X9R8 | 43.39% | 454 | 1e-106 | Uncharacterized protein n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A0J9X9R8_GEOCN |
| A0A167CD32_9ASCO | 35.75% | 456 | 3e-79 | Guanine nucleotide-binding protein subunit beta OS=Sugiyamaella lignohabitans GN=ASC1 PE=4 SV=1 |
| A0A1E3PS42_9ASCO | 37.11% | 477 | 2e-72 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48905 PE=4 SV=1 |
| A0A060T8A1_BLAAD | 35.60% | 455 | 4e-67 | ARAD1D02002p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D02002g PE=4 SV=1 |
| A0A1E4TFT5_9ASCO | 29.49% | 434 | 8e-46 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_26852 PE=4 SV=1 |
| Q6CCY4_YARLI | 26.59% | 455 | 2e-24 | YALI0C05555p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C05555g PE=4 SV=1 |
| A0A1D8PM77_CANAL | 26.81% | 332 | 1e-09 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3778 PE=4 SV=1 |
| NLE1_YEAST | 30.59% | 85 | 4e-08 | Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1696
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
-
Repeat
1
50
100
150
200
250
300
350
400
462
Detailed signature matches
no IPR
Unintegrated signatures
-
-
cd00200 (WD40)
Residue annotation
-
structural tetrad ...
Protein sequence
>MCA_02989_1 MSLIKRARLSEPDSYSSSTAVTRTQNSDRVSSLSAPVLQLSGHNGAVLAVKYDPFGQLIASGGAQSEVFLWRASGDNAHL ATLRGHKGAVLDLAWSRDGTEVFTASSDHTVATFDIETGTRIRKHELPTSTAAYSSVLPPSSSQSLQNLPTFKNDSSMVN SLDTVKRGTELIVAGTDAGWVLVFDPREKFPVYSIRPPPSVLSARQQQQISKQQQTLLETIATAKTKPTSIPKVSLPADA ALPILAVASNQDGSLIFSAGIDDTISAWDPRTLSSNKGIQLSSNKSNINMTRITGLDQPIFTLRGHSDTVTSLRVSPDNE MLLSNSMDSTTRTWNIRPFASSAASSRSIKIYNGAPAGVESRILRSCWSTFPDSLLPSSLFATSNTLSSASSAGSLIASG AGDNTCVIWDSKTARLLYKLPGHAGPVTDVCFSPIEPVIATASTDGSIILGELSASGTRIGN
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.