Protein
MCA_02978_1
Length
1,470 amino acids
Gene name: RPO41A
Description: DNA-directed RNA polymerase, mitochondrial
Browser: contigB:2992180-2996652-
RNA-seq: read pairs 1366, FPKM 11.5, percentile rank 28.4% (100% = highest expression)
Protein function
| Annotation: | RPO41A | DNA-directed RNA polymerase, mitochondrial | |
|---|---|---|---|
| KEGG: | K10908 | POLRMT | DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] |
| EGGNOG: | 0PJAJ | RPO41 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) |
| SGD closest match: | S000001858 | RPO41 | DNA-directed RNA polymerase, mitochondrial |
| CGD closest match: | CAL0000185076 | RPO41 | DNA-directed RNA polymerase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02549_1 | 60.42% | 1397 | 0.0 | MIA_02549_1 |
| A0A0J9X9D3_GEOCN | 52.28% | 1379 | 0.0 | DNA-directed RNA polymerase OS=Geotrichum candidum GN=BN980_GECA05s01335g PE=3 SV=1 |
| UniRef50_A0A0J9X9D3 | 52.28% | 1379 | 0.0 | DNA-directed RNA polymerase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X9D3_GEOCN |
| A0A167E4J0_9ASCO | 51.73% | 1154 | 0.0 | DNA-directed RNA polymerase OS=Sugiyamaella lignohabitans GN=RPO41 PE=3 SV=1 |
| A0A060T4A8_BLAAD | 45.42% | 1310 | 0.0 | DNA-directed RNA polymerase OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B01804g PE=3 SV=1 |
| A0A1E3PUP0_9ASCO | 46.00% | 1289 | 0.0 | DNA-directed RNA polymerase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_30998 PE=3 SV=1 |
| RPOM_YEAST | 45.67% | 1200 | 0.0 | DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=3 SV=2 |
| A0A1D8PCA4_CANAL | 39.75% | 1185 | 0.0 | DNA-directed RNA polymerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPO41 PE=3 SV=1 |
| A0A1E4TGB0_9ASCO | 37.07% | 1373 | 0.0 | DNA-directed RNA polymerase OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_31657 PE=3 SV=1 |
| Q6CH64_YARLI | 37.99% | 1166 | 0.0 | DNA-directed RNA polymerase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A12001g PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.5802
Predicted cleavage: 36
Protein family membership
- DNA-directed RNA polymerase, phage-type (IPR002092)
Domains and repeats
-
Domain
1
200
400
600
800
1000
1200
1470
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
-
SSF56672 (DNA/RNA p...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_02978_1 MLSAHGLSKTKRYSLAQYKLTCNRISSIITHSGRSSATFNNEFSVLLSRKFKTDAKASQAMAAPSYNSITKEPFIASNNT ISSSPLLGSLNSNSDSTNNTSWSSSKDVISRHHFLKDFSHLWTLLEACLDSGNMTRAENVLISFSQHSREAEIVSAVNKY LYRLVELNEQDETVAQNWLKTISSKIPMFTPNSATKAILLRNKCLATKFSKNNIELFLQINSKKCLNHIEILGVDMLAKI LQTCNLPLSTIDPRFHTLLKIHLNQIEQQKTESLQQESKSNAESEVVASTPKDTLSELLEKASSASISQVEAIKNPKETK EMITGFMENFNEDDIKTLDKSGVEELSSVRSYSLKTIRHALSGFTTNNEISQSIYEKALPFLSEKSSNKNNYIDFFSIFK DLENSKDVSEAERKELYDAFEKYNYIRQRAIEKRGLEGASLKWKNSYDQMREAGAFSLKSLEAMFWEWNDSFQVVFKREL ERIDEVLKYSSARKAADAMSKSENQDDVQDSLGLSASDRFEYGPYLSLVKPDKLGIITILELMKLSSTGGVQMGMKTAKA VLSVGKAVEMEYRVSKASKREENILGKSGVEQLTNVSSDVNEEIKGKGINAQISWPSHIRAKIGSLLIALLINVAKVTVK GIDPITKAAVKGKAPAFYHTYQYQNGTRLGVLKLHNSLSKYVSGDTPSNILHPQLLPMLVKPIPWTSYKTGGYLYSTNTV MRIKDAPEQMAYLKQASDNGHLTAVYDGLNVLGNTPWTVNTDVFNVITKVWNQNKEFLEIPRDPGELVLPPAPPKGADPQ EIRNYRRECRRIHNEHSTSYSQRCDINYKLEIARAYLGERFYFPHNMDFRGRAYPLSPHLNHLGNDLSRSLLKFWNGRKL GSAGLRWLKIHTANVFGYDKFSFEEREQFINDHLEEIRDSALHPLDGKGWWQEGSDPWQTLAACIELNNALSCENPEEFV SHLPVHQDGTCNGLQHYAALGGDVEGARQVNLAPSDRPQDVYAKVLEIVQRLVNQDAEKGDPIAVLLKDQLARKVIKQTV MTTVYGVTFIGARAQIASQLKDKEGVSKENIFSCSIYITKKVFQAVRELFEGAHLIQDWLGDSATKIAKSIRLDIDSSNK KNGNRPDFMSSVIWTTPLGLPIVQPYRQLRKVQVTTKLQTVVLTDPYALRGVNARKQKTAFPPNYVHSLDASHMLLSASE CGRQNLDFASVHDSYWTHAADVDKMNKILRDAFIELHQVDLVSQLKNEFEQRYGHMLEYVEIPRNSKVAQEVIEARQKLS AQLHAQQQAELEEAAANGKKLTTKAKKLRSKKSGLTFEEEIAIERRRLELLASDVPSEVEEGRAMVTPFSIIEKLSDEEL KSLINQSQENKVKKQKPLNIKSSEHEGSGYDAQDITSQLEIDEDAEEAIDEIDGIDEESSTSTKATTIPTLDDSKKGTNL GVFVRLKIDPVPPKGDFDVRDLVKSKYFFC
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
None predicted.