Protein

MCA_02831_1

Length
672 amino acids

Gene name: RSC8

Description: Chromatin structure-remodeling complex protein

Browser: contigB:2474828-2476847-

RNA-seq: read pairs 2084, FPKM 38.3, percentile rank 59.4% (100% = highest expression)

Protein function

Annotation:RSC8Chromatin structure-remodeling complex protein
KEGG:K11649SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
EGGNOG:0PFJSFG01925.1complex subunit
SGD closest match:S000001933RSC8Chromatin structure-remodeling complex protein RSC8
CGD closest match:CAL0000189929orf19.7234Uncharacterized protein

Protein alignments

%idAln lengthE-value
MIA_01464_156.57%6010.0MIA_01464_1
A0A0J9X7E3_GEOCN51.49%5710.0Similar to Saccharomyces cerevisiae YFR037C RSC8 Component of the RSC chromatin remodeling complex OS=Geotrichum candidum GN=BN980_GECA03s06291g PE=4 SV=1
A0A060T228_BLAAD46.72%5808e-178ARAD1C28600p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C28600g PE=4 SV=1
A0A1E3PK91_9ASCO51.15%5203e-166SWIRM-domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82796 PE=4 SV=1
UniRef50_A0A1E3PK9151.15%5209e-163SWIRM-domain-containing protein (Fragment) n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PK91_9ASCO
A0A167FUB9_9ASCO44.29%5876e-164Rsc8p OS=Sugiyamaella lignohabitans GN=RSC8 PE=4 SV=1
Q6C2X4_YARLI42.14%5793e-152YALI0F04334p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F04334g PE=4 SV=1
A0A1E4TJH8_9ASCO50.00%3521e-110Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_12760 PE=4 SV=1
RSC8_YEAST37.55%4903e-104Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1
A0A1D8PFW3_CANAL33.06%6171e-96Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7234 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0831

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 100 200 300 400 500 600 672

Detailed signature matches

  1. Domain IPR009057
    Homeobox domain-like
    1. SSF46689 (Homeodoma...)
  2. Domain IPR007526
    SWIRM domain
    1. PF04433 (SWIRM)
    2. PS50934 (SWIRM)
  3. Domain IPR011991
    Winged helix-turn-helix DNA-binding domain
    1. G3DSA:1.10.10.10
  4. Domain IPR001005
    SANT/Myb domain
    1. PF00249 (Myb_DNA-bi...)
    2. SM00717 (sant)
  5. Domain IPR017884
    SANT domain
    1. PS51293 (SANT)
  6. Domain IPR032451
    SMARCC, C-terminal
    1. PF16495 (SWIRM-assoc_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:1.10.10.60
  3. cd00167 (SANT)
  4. mobidb-lite (disord...)

Residue annotation

  1. DNA binding site c...

Protein sequence

>MCA_02831_1
MSVDSSSSNKPVEDSSSSNQEQPVTNSTENATTTVTTENTEDTEMTDVDPSKDKPAKEGEATEEVATEESKTDDKKEETE
EASTLEDVPKTVTEARAVKSAVEEKARAFLAKQTYRVIIPSFSAWFDRTKCHDIEKKSLPEFFNNKHRTKTPEIYMDYRN
FMIDTYRLNPTEYLTFTACRRNLAGDVAAIMRVHSFLEQWGLINYQIDPETKPSAIGPQFTGHYQILLDAPEGLTPFIPA
KNSRYTTKGKKPEAIKVNQDPTKASAVDASSTTLVESNGTSNGSLVNGTIKEEEKVYIKKENDGITTNLNIRRNLYDSTA
DAIALYDETQRQLGALNTRSYNCYTCGDDTTKVRYHNLRSKQSLSPLCFKNGYFPSRFSNGDYVKIVQAQSASTEWTDQE
VLLLMEGIEMYEDDWNSIAYHVGTRNRESCIKKFLQLPIEDPYLVKSHKKIKVEEQEDDESNALVSNKRKAADDSTEPDS
KIYRALKQFLKESSSKESEENEDDEQDSLDAKAISEILSRRASKLVKSEKEHQQLNLELLVETQLEKLNRKIEQFDRLEQ
VIAVEKQELEIAQQQLFMDRLALKRQGELVVSKLQQAAAQVTTNPTEALELANSATKIASLPLKRLIPTTNKEGSGAVSV
ELGTSSSSTTTENSKLKPVSLEGPQTFKLWSI

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003677 DNA binding
GO:0005515 protein binding

Cellular Component

None predicted.