Protein
MCA_02828_1
Length
369 amino acids
Description: Polyprotein of L1-like non-LTR retrotransposon Zorro 1
Browser: contigB:2469984-2471222+
RNA-seq: read pairs 1240, FPKM 41.4, percentile rank 61.1% (100% = highest expression)
Protein function
| Annotation: | Polyprotein of L1-like non-LTR retrotransposon Zorro 1 | ||
|---|---|---|---|
| EGGNOG: | 0PQVB | Reverse transcriptase (RNA-dependent DNA polymerase) | |
| CGD closest match: | CAL0000185701 | FGR14 | Fgr14p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04317_1 | 49.86% | 347 | 5e-110 | MIA_04317_1 |
| A0A167C1S4_9ASCO | 40.60% | 335 | 1e-72 | Polyprotein of L1-like non-LTR retrotransposon Zorro 1 OS=Sugiyamaella lignohabitans GN=POL90 PE=4 SV=1 |
| UniRef50_A0A167E5I2 | 38.44% | 333 | 6e-68 | Polyprotein of L1-like non-LTR retrotransposon Zorro 3 n=7 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167E5I2_9ASCO |
| A0A1D8PSY7_CANAL | 24.49% | 245 | 2e-12 | Fgr14p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FGR14 PE=4 SV=1 |
| Q6CCB5_YARLI | 21.43% | 294 | 8e-11 | YALI0C03498p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C03498g PE=4 SV=1 |
| A0A0J9XHZ4_GEOCN | 26.14% | 88 | 1e-06 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA17s02067g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0269
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
369
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
SSF56672 (DNA/RNA p...)
Protein sequence
>MCA_02828_1 MDINILYKYKLQARLSQEQPDIERARKAQKQFQDNLYKARDKSWNDFLGSLRETDVWSVLKWINPKREDNPAVQLYKDED LNLTQSIKEVIDVLWRSLLPEVERGEDLTFDIEEDERWPKLAEVEINDAIRSIPDKKAPGPDGITGKMLKEARKNTGFKL RFDKLLSACIDQGYHPKPWKSSNIVAIPKPAKDDYRSPKAYRPISLLKMTLKTLEKIVQNHLTYLTKDLLPKEQFGGRRG YAANDAVLHLVHKVKTERRKTAAIMIGIQGAFDHVNCQLLIETMEKMNLPEKVKSWTYQFMTGRRAKLSFDGVAEPEKDV KTGIPQGSPISSLLFMIYTTELFAEIKKWEVDGQPPLPISIPYSKTNLT
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.