Protein
MCA_02793_1
Length
248 amino acids
Browser: contigB:2390391-2391404+
RNA-seq: read pairs 1447, FPKM 71.8, percentile rank 73.2% (100% = highest expression)
Protein function
| KEGG: | K12881 | THOC4 | THO complex subunit 4 |
|---|---|---|---|
| EGGNOG: | 0PQ3J | FG06855.1 | rna binding |
| SGD closest match: | S000004949 | HRB1 | Protein HRB1 |
| CGD closest match: | CAL0000195952 | PAB1 | Polyadenylate-binding protein, cytoplasmic and nuclear |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01472_1 | 72.83% | 92 | 9e-39 | MIA_01472_1 |
| A0A0J9X504_GEOCN | 39.57% | 187 | 2e-28 | Similar to Saccharomyces cerevisiae YDR381W YRA1 RNA binding protein required for export of poly(A)+ mRNA from the nucleus OS=Geotrichum candidum GN=BN980_GECA03s03046g PE=4 SV=1 |
| UniRef50_A0A0J9X504 | 39.57% | 187 | 5e-25 | Similar to Saccharomyces cerevisiae YDR381W YRA1 RNA binding protein required for export of poly(A)+ mRNA from the nucleus n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X504_GEOCN |
| A0A060TC52_BLAAD | 39.10% | 133 | 3e-20 | ARAD1D33352p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D33352g PE=4 SV=1 |
| A0A1E3PGE6_9ASCO | 45.21% | 73 | 9e-18 | RNA-binding domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_42819 PE=4 SV=1 |
| Q6C2H2_YARLI | 34.32% | 169 | 7e-18 | YALI0F07909p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F07909g PE=4 SV=1 |
| PABP_CANAL | 34.78% | 69 | 6e-08 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3 SV=1 |
| HRB1_YEAST | 30.99% | 71 | 4e-07 | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 |
| A0A167EIC1_9ASCO | 33.33% | 60 | 1e-06 | Polyadenylate-binding protein OS=Sugiyamaella lignohabitans GN=PAB1 PE=3 SV=1 |
| A0A1E4T9Q8_9ASCO | 29.21% | 89 | 8e-06 | Polyadenylate-binding protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_70868 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.3872
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
248
Detailed signature matches
no IPR
Unintegrated signatures
-
-
cd12418 (RRM_Aly_RE...)
-
mobidb-lite (disord...)
Residue annotation
-
peptide binding si...
Protein sequence
>MCA_02793_1 MSDPIPNLDRSLDEIISDKYKSRSFNNRRGRGNNRGYNGNRGRSNYNNYNNRNSGNNSYHDRNRNNYKSAIDSRVRKNLG HTTGGRFSNPRHQQKVPDVSNTIKISNLYYELSEDDIHELLKRVGQVRTVRLQYDDSGRSTGIAYANFENHSDAVAAVET FNGKKAAGLTISLKLLDESPLLRNRISFSKGRNTDESSAQRSKTIEELDEELNAYMNGKDTNDDTTTKTDSRPEEKVKEE GESEMKDA
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.