Protein
MCA_02730_1
Length
888 amino acids
Gene name: SEN1B
Description: Helicase SEN1
Browser: contigB:2204101-2206896+
RNA-seq: read pairs 26, FPKM 0.4, percentile rank 6.0% (100% = highest expression)
Protein function
| Annotation: | SEN1B | Helicase SEN1 | |
|---|---|---|---|
| KEGG: | K10706 | SETX | senataxin [EC:3.6.4.-] |
| EGGNOG: | 0PFUU | SEN1 | tRNA-splicing endonuclease |
| SGD closest match: | S000004422 | SEN1 | Helicase SEN1 |
| CGD closest match: | CAL0000183795 | SEN1 | Putative DNA/RNA helicase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A060TAU8_BLAAD | 31.63% | 803 | 3e-96 | ARAD1D26598p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D26598g PE=4 SV=1 |
| UniRef50_A0A060TAU8 | 31.63% | 803 | 6e-93 | ARAD1D26598p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TAU8_BLAAD |
| MIA_03901_1 | 35.63% | 623 | 1e-92 | MIA_03901_1 |
| A0A1E3PFB1_9ASCO | 35.07% | 633 | 1e-92 | p-loop containing nucleoside triphosphate hydrolase protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_7636 PE=4 SV=1 |
| Q5ANG6_CANAL | 34.72% | 625 | 7e-90 | Putative DNA/RNA helicase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEN1 PE=4 SV=1 |
| A0A0J9X8S5_GEOCN | 30.58% | 811 | 8e-89 | Similar to Saccharomyces cerevisiae YLR430W SEN1 Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs OS=Geotrichum candidum GN=BN980_GECA06s00615g PE=4 SV=1 |
| SEN1_YEAST | 34.25% | 654 | 1e-87 | Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2 |
| W0TYQ4_YARLI | 33.83% | 674 | 4e-86 | YALI0A19404p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19404g PE=4 SV=1 |
| A0A167CSC4_9ASCO | 32.50% | 560 | 3e-78 | Putative DNA/RNA helicase SEN1 OS=Sugiyamaella lignohabitans GN=SEN1 PE=4 SV=1 |
| A0A1E4THA5_9ASCO | 28.94% | 812 | 7e-81 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_12256 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2471
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
888
Detailed signature matches
-
-
SSF52540 (P-loop co...)
-
no IPR
Unintegrated signatures
Residue annotation
-
ATP binding site c...
Protein sequence
>MCA_02730_1 MARDSNNLVKEITEYSQSLRLSPSQQNPCELKPDIIKEIITWDPYNRSDIPRIRNRKPKIKFENLKDIPDGSCLIDNYIE IISNLAKIEFWKSIQNEIKYEPEIEFDITIQSTKKGYTGKISNITKFGIPFQIETIETENEDEDEDEEGIIKQDDLLLVC ETSNLGNILETAKRNGRFTFVKKVKNNICHLSNVPFSGNCYGCKANSLTTVSRQFEALYNLKNTYPKRPLFNQVLSRMPN DVVQSSDSNIQQVAKKFKLNSSQAETLLGTTSLKGINLIQGPPGTGKTKTIAAIIAHTLLADPKKRILVCTPSNAGVNEI VTRLVDGIPYIDPDSNTESLMKPSVVRIGRLADINEQEISYSKLRSVYLNTVFEDHAYWSQKSQDVPEFTNRELFLIFKA MKKYIQSQFAMTVETSLRFYNSGLSNEERSESAEFSLYSKVFLNEFGVTLKRSQNPQIQTLNSLIDYCNKQIKSLLEKKK NTIKNIGSDERENIVFQILSKTQVVCSTLAGAGHRSVYQQEEFDLIIIDEAGQAVEVDCLIPLQYKCDTCIMVGDSKQLQ PTVFSDLAADMGYDISLFTRMAENQSNSYMLNTQYRMHPDISKFPLKQFYNNKVINGPRTSIDTIRPWHKLGHDFGTFRF FDISDGTHRSLEYSQSIINTEEVESIVNMYDILQKNTSIDITERVGIVTPYKAQTESLKKAFEKKYGQSEAEKMFEKLEI STVDRFQGQEKDIIMLSCVRSGSYSRNSIGFLKDPNRLNVAVTRAKSSLWVFGNGQTLSSNAMWRKMIDIAKDMRYYINA KNSFYFFVLSHKLQPLKNQDEKLIKKSETQNCISTAKVKRLILKTELDRLSDFCLKYNTEKEKMINNGNIGKAIKNILES YGIDWKET
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.