Protein

MCA_02687_1

Length
516 amino acids

Description: protein with DDE superfamily endonuclease and DNA-binding HTH (CenpB-type) domains

Browser: contigB:2054904-2056455-

RNA-seq: read pairs 1286, FPKM 30.7, percentile rank 53.4% (100% = highest expression)

Protein function

Annotation:protein with DDE superfamily endonuclease and DNA-binding HTH (CenpB-type) domains
EGGNOG:0PQVYFGSG_14035conserved hypothetical protein
CGD closest match:CAL0000183805orf19.4918Uncharacterized protein

Protein alignments

%idAln lengthE-value
UniRef50_Q152S024.42%5202e-27Transposase n=2 Tax=Ophiostoma TaxID=5159 RepID=Q152S0_OPHUL
Q5AL59_CANAL24.32%4072e-24Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4918 PE=4 SV=1
MIA_01692_123.32%4462e-21MIA_01692_1
Q6C7B4_YARLI25.27%2812e-14YALI0E02178p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E02178g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0247

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 400 450 516

Detailed signature matches

  1. Domain IPR006600
    HTH CenpB-type DNA-binding domain
    1. PF03221 (HTH_Tnp_Tc5)
    2. PS51253 (HTH_CENPB)
  2. Domain IPR004875
    DDE superfamily endonuclease domain
    1. PF03184 (DDE_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_02687_1
MDSSKEDKILAVIATFKGPKNTDTLYQISKREGVCYKTVKNRMAGMESKKEASKKRQILTPEEELLLEDYIVYLARKKNS
MPSSEVIMKLAGEILRGTYPSAPDPSRTWLENFNKRSQYLKRVKTQLMDQPRIKPNGEKLIESFFERLEEYEERFGVTLD
RVYNLDECAFKVGESMNEAWEICPESYRSNISNQSSELVTVMEVISATGKILTPLFIYKDKDVMKSWVSGLTDEKVVVAT
SNTAFINSEVFLNWFNDHFPVLPVWQILILDGCKTHTNIAFHNLALKKRVIPVYLPAHMPNILQSLDRKCFSIAKINLRK
HNAIKFASGIPPTKLNFMKTYFHIRTRGYCSRYIKNGWKRAGIYPRDIPAAIAESKTQMNMTELTETDPVIPGTSEAQSC
KNKGSRKFLTSAMDSPSPFASTPEGWAAQCKQYEENPKMALAALKVFHRNDQRLRAEFNSLRRKVALAENKLEKALNENR
KKPRLSSNLNDRENPLGEDLEGFRDEDSDDSDIALS

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.