Protein
MCA_02530_1
Length
224 amino acids
Gene name: YTH1
Description: mRNA 3'-end-processing protein YTH1
Browser: contigB:1572788-1573501+
RNA-seq: read pairs 655, FPKM 36.0, percentile rank 57.8% (100% = highest expression)
Protein function
| Annotation: | YTH1 | mRNA 3'-end-processing protein YTH1 | |
|---|---|---|---|
| KEGG: | K14404 | CPSF4 | cleavage and polyadenylation specificity factor subunit 4 |
| EGGNOG: | 0PKZQ | YTH1 | mRNA 3'-end-processing protein YTH1 |
| SGD closest match: | S000006311 | YTH1 | mRNA 3'-end-processing protein YTH1 |
| CGD closest match: | CAL0000192895 | YTH1 | mRNA 3'-end-processing protein YTH1 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03292_1 | 84.30% | 172 | 2e-110 | MIA_03292_1 |
| A0A0J9XK49_GEOCN | 80.62% | 160 | 2e-97 | Similar to Saccharomyces cerevisiae YPR107C YTH1 Essential RNA-binding component of cleavage and polyadenylation factor OS=Geotrichum candidum GN=BN980_GECA24s00329g PE=4 SV=1 |
| A0A060SXH3_BLAAD | 77.71% | 166 | 2e-95 | ARAD1A03608p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A03608g PE=4 SV=1 |
| A0A1E3PJ97_9ASCO | 77.07% | 157 | 2e-90 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50809 PE=4 SV=1 |
| UniRef50_Q6C922 | 67.09% | 158 | 8e-71 | mRNA 3'-end-processing protein YTH1 n=10 Tax=Saccharomycetales TaxID=4892 RepID=YTH1_YARLI |
| YTH1_YARLI | 67.09% | 158 | 3e-74 | mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YTH1 PE=3 SV=1 |
| A0A1E4TDN2_9ASCO | 60.25% | 161 | 2e-69 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_147751 PE=4 SV=1 |
| YTH1_YEAST | 56.28% | 199 | 6e-69 | mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1 |
| YTH1_CANAL | 62.66% | 158 | 3e-68 | mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1 |
| A0A161HIN8_9ASCO | 62.37% | 93 | 2e-40 | Yth1p OS=Sugiyamaella lignohabitans GN=YTH1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.6631
Predicted cleavage: 20
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
224
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_02530_1 MSNTAKFGLDPNRPICRYYAHGICPRGKECPDKHVLPSYSNKIVCKHWLRGLCKKGDNCEFLHEYNLRKMPECQFFSKNG FCTQSPDCLYLHIDPLSKIAPCPNYEKGFCKLGPSCTKRHIRKQMCTRYLAGFCPLGPNCDEGGHPKFIGITDSMRITKD FKPAPDHVRENMELLAEGRKRIVERLTKNGEVIETEVSSKQNTPEVPSVEESTTSAPMEVDSTT
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0046872 metal ion binding
Cellular Component
None predicted.