Protein

MCA_02524_1

Length
171 amino acids

Gene name: RPB7

Description: DNA-directed RNA polymerase II subunit RPB7

Browser: contigB:1558768-1559476-

RNA-seq: read pairs 725, FPKM 52.1, percentile rank 66.2% (100% = highest expression)

Protein function

Annotation:RPB7DNA-directed RNA polymerase II subunit RPB7
KEGG:K03015RPB7 DNA-directed RNA polymerase II subunit RPB7
EGGNOG:0PG7BRPB7RNA polymerase II
SGD closest match:S000002812RPB7DNA-directed RNA polymerase II subunit RPB7
CGD closest match:CAL0000194040RPB7DNA-directed RNA polymerase II subunit

Protein alignments

%idAln lengthE-value
A0A0J9XFK6_GEOCN81.87%1711e-88Similar to Saccharomyces cerevisiae YDR404C RPB7 RNA polymerase II subunit B16 OS=Geotrichum candidum GN=BN980_GECA13s02969g PE=4 SV=1
A0A060TG99_BLAAD76.02%1714e-89ARAD1D21670p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D21670g PE=4 SV=1
A0A1E3PML3_9ASCO74.85%1713e-87DNA-directed RNA polymerase II 19 kDa polypeptide OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82427 PE=4 SV=1
A0A1E4THT2_9ASCO70.76%1717e-83Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_122520 PE=4 SV=1
Q5A8Y7_CANAL71.60%1695e-81DNA-directed RNA polymerase II subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB7 PE=4 SV=1
A0A167DH21_9ASCO79.86%1392e-79DNA-directed RNA polymerase II subunit RPB7 OS=Sugiyamaella lignohabitans GN=RPB7 PE=4 SV=1
UniRef50_A0A167DH2179.86%1395e-76DNA-directed RNA polymerase II subunit RPB7 n=2 Tax=Fungi TaxID=4751 RepID=A0A167DH21_9ASCO
B5FVE7_YARLI72.08%1542e-78YALI0D11627p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D11627g PE=4 SV=1
MIA_03297_175.00%1367e-72MIA_03297_1
RPB7_YEAST57.31%1713e-62DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.6009

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 20 40 60 80 100 120 140 160 171

Detailed signature matches

  1. Domain IPR005576
    RNA polymerase Rpb7, N-terminal
    1. PF03876 (SHS2_Rpb7-N)
    2. G3DSA:3.30.14...
    3. SSF88798 (N-termina...)
  2. Domain IPR012340
    Nucleic acid-binding, OB-fold
    1. SSF50249 (Nucleic a...)
  3. Domain IPR022967
    RNA-binding domain, S1
    1. SM00316 (S1_6)
  4. Domain IPR003029
    S1 domain
    1. PS50126 (S1)
    2. PF00575 (S1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.40.50...
  2. cd04329 (RNAP_II_Rp...)
  3. cd04462 (S1_RNAPII_...)

Residue annotation

  1. Rpb6 interaction s...
  2. Rpb1 interaction s...
  3. Rpb4 interaction s...
  4. RPB7- RPB4 dimer i...
  5. RNA binding site c...

Protein sequence

>MCA_02524_1
MFFLKDLSLKLKLPPKSFGPHMKQILRSKLIEDVEGTCTGQFGYIICVMDGMKIDIGKGRIIPGDGSAEFEVKYSAIVWR
PFKGEVVDGVVTKVNNLGFFVDVGPLSVFISVHLIPSDMEFNAKENPQTYGSDEQTIEKGSRVRLKIVGVRADVGKMFAI
GTIKEDFLGVL

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003676 nucleic acid binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.