Protein

MCA_02496_1

Length
673 amino acids

Gene name: SRM1

Description: Guanine nucleotide exchange factor SRM1

Browser: contigB:1476739-1478761+

RNA-seq: read pairs 3743, FPKM 68.6, percentile rank 72.1% (100% = highest expression)

Protein function

Annotation:SRM1Guanine nucleotide exchange factor SRM1
KEGG:K11493RCC1 regulator of chromosome condensation
EGGNOG:0PHJ0FG08173.1ran exchange factor Prp20 Pim1
SGD closest match:S000003065SRM1Guanine nucleotide exchange factor SRM1
CGD closest match:CAL0000200421orf19.5184Ran guanyl-nucleotide exchange factor

Protein alignments

%idAln lengthE-value
MIA_00280_173.72%4300.0MIA_00280_1
A0A167DIR6_9ASCO65.06%4350.0Srm1p OS=Sugiyamaella lignohabitans GN=SRM1 PE=4 SV=1
UniRef50_A0A167DIR665.06%4350.0Srm1p n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167DIR6_9ASCO
A0A0J9XBF6_GEOCN62.53%4430.0Similar to Saccharomyces cerevisiae YGL097W SRM1 Nucleotide exchange factor for Gsp1p OS=Geotrichum candidum GN=BN980_GECA08s00681g PE=4 SV=1
A0A060SWM4_BLAAD57.11%4505e-177ARAD1A02354p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A02354g PE=4 SV=1
A0A1E4TA92_9ASCO49.56%4563e-138Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_126970 PE=4 SV=1
A0A1E3PHA4_9ASCO46.91%4373e-128Nucleotide exchange factor for Gsp1p, localizes to the nucleus (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_26437 PE=4 SV=1
A0A1D8PR80_CANAL44.40%4551e-114Ran guanyl-nucleotide exchange factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5184 PE=4 SV=1
RCC1_YEAST45.12%4301e-112Guanine nucleotide exchange factor SRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRM1 PE=1 SV=1
Q6CH27_YARLI44.39%4374e-106YALI0A13299p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A13299g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0840

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 100 200 300 400 500 600 673

Detailed signature matches

  1. Domain IPR009091
    Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
    1. SSF50985 (RCC1/BLIP-II)
  2. Repeat IPR000408
    Regulator of chromosome condensation, RCC1
    1. PS00625 (RCC1_1)
    2. PF00415 (RCC1)
    3. PS00626 (RCC1_2)
    4. PS50012 (RCC1_3)
    5. PR00633 (RCCNDNSATION)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:2.130.1...
  3. PF13540 (RCC1_2)
  4. mobidb-lite (disord...)

Protein sequence

>MCA_02496_1
MTTTGLRKRKAKDEEPETSSSKSKKTSSTSSTKATKKSTSTSSTSFTKAKKSASSTTEDAPRKTKRVKREEPAAEKPASK
KTAASAKKSSSETTTKKKTQPAKATKTKSEPAPKKATKSSSSAAAKKKETAAAAAEKKAAALKKEAELEEAKRVKAEKAA
EKAAELEVKRAAAAAEAEKAAAEAAAKAYEEALEQVRQGHVLRSRATKSGFNEAPKLPSTKLNVYVFGSGSICELGLGPA
VVEVKRPRLNPLLPIDKVGIVQLAVGGAHVLALDYNGRVWAWGTNDSGVLGRDTKENEDEADEHDDWVINSKESTPTLVP
GLPENIPIVKVAASDNLSVAVDGEGHLWAWGTFIDDGKKCFKNDVKYQRTPIEITTVRNVVDVACGKDHVLILDRSGTVY
SWGVGSSCQLGVKVNPNLRTRVFGPLKIPGLNKVKRVFAGEYHSFALKEDGKVFSWGLNNFGQAGNSELVGDGAIIEKPT
HAPFFDDKNIVEIAGGNHHSLALTKDGDIYAFGEMNFHQLGLNPANLPESTVREKNGTPAYVPVPTKIEAPGLPKFKAIA
TGSDHSLAISAEDGSIWTWGFGETYQLGHGKPAGEDSPEDEEVPKRIDNTATRGVNMVFVGAGGQFSVAAGLPREEDVQK
KEEEKKDVVANGSVNGSAKEATEKKEEAKEEKN

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.